Basic Information

Insect: Arma custos
Gene Symbol: -
Assembly: GCA_037127475.1
Location: CM073764.1:103399013-103402894[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.3 65 6.3 1.0 2 21 92 110 91 111 0.93

2 15 0.19 42 6.9 0.6 2 20 140 158 139 163 0.90

3 15 0.00033 0.071 15.6 0.0 2 21 239 258 238 259 0.94

4 15 0.004 0.87 12.2 0.7 2 21 263 282 262 286 0.89

5 15 0.005 1.1 11.9 6.4 1 23 306 328 306 328 0.98

6 15 1.7 3.7e+02 3.9 0.1 3 23 337 358 336 358 0.92

7 15 0.015 3.3 10.4 2.0 1 23 363 385 363 385 0.95

8 15 0.0016 0.34 13.5 0.8 1 23 389 412 389 412 0.95

9 15 1.9e-05 0.0041 19.5 0.3 2 23 418 439 418 439 0.97

10 15 1e-05 0.0022 20.3 0.6 3 23 447 467 445 467 0.96

11 15 0.0039 0.84 12.2 0.4 2 23 474 495 474 495 0.96

12 15 6.9e-06 0.0015 20.9 0.9 1 23 501 523 501 523 0.99

13 15 1.5e-06 0.00032 23.0 0.8 1 23 527 549 527 549 0.99

14 15 2.7e-06 0.00058 22.2 2.7 1 23 555 577 555 577 0.98

15 15 1.6 3.4e+02 4.0 6.3 1 23 583 606 583 606 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.3	65	6.3	1.0	2	21	92	110	91	111	0.93
2	15	0.19	42	6.9	0.6	2	20	140	158	139	163	0.90
3	15	0.00033	0.071	15.6	0.0	2	21	239	258	238	259	0.94
4	15	0.004	0.87	12.2	0.7	2	21	263	282	262	286	0.89
5	15	0.005	1.1	11.9	6.4	1	23	306	328	306	328	0.98
6	15	1.7	3.7e+02	3.9	0.1	3	23	337	358	336	358	0.92
7	15	0.015	3.3	10.4	2.0	1	23	363	385	363	385	0.95
8	15	0.0016	0.34	13.5	0.8	1	23	389	412	389	412	0.95
9	15	1.9e-05	0.0041	19.5	0.3	2	23	418	439	418	439	0.97
10	15	1e-05	0.0022	20.3	0.6	3	23	447	467	445	467	0.96
11	15	0.0039	0.84	12.2	0.4	2	23	474	495	474	495	0.96
12	15	6.9e-06	0.0015	20.9	0.9	1	23	501	523	501	523	0.99
13	15	1.5e-06	0.00032	23.0	0.8	1	23	527	549	527	549	0.99
14	15	2.7e-06	0.00058	22.2	2.7	1	23	555	577	555	577	0.98
15	15	1.6	3.4e+02	4.0	6.3	1	23	583	606	583	606	0.97

Sequence Information

Coding Sequence: ATGGTTCTTAGGAACGACAGAAATCAATTGAAACAAGGTTGTGTTGCTctgtatgTTGATTCCAACTTCAAAAATGATTCCAGTTCTGGTACTTATCAATGTCAGACTTGTGCTATTGATGAAGAAACAAGACTTGAACAAGAACAACCTGCCCAGGAAGAAAATACGGGTGCAGAACTTGCCACAGAAATGcctgaattttttaaagatccTGAAAACAATAATGAAGTCAGGAATTTAGAAAGAAATGAAGAAGAATGTGTATCTTATTTACGGTGTGAAGGCTGTGAAGAGCAATTTAAACTCGGAGatttaacaaaacatttgtGTTTTATTAGAGGTGACACTGTGGAATTTGTCGAAGTAGAAGCTCCTACAATTCAAGGAAAGAAGAGCCAACCAGCTTCAGTCCCTTTATATTGCAAAGATTGTGGtgatcaattttttaatattgaagacTTGCGAAATCATTGGGATCATACTGGTCATTTAAGACAAGTAAGTACTACAGCTGTGGAGCTCAATAAAATAAGAGACAAGTATAAGAAAACAGAAGCTACTTTTAAAGTTGTCAAACAGAATTTTAATATTCGTGCCATAATACCTGGTCAGAACGAAGAGGCACTACGTTCTGCAGATGATTATAAGGATATGTTTGTTAAGGTTAGCAGAAATACTGATTCTATTGACGATTTTGTTAGAAAAGATGGAAAAGAGTGTGAAACATGTGGTATTGTTTTTGCTACCAAAGAGTTACTAGAAGAACATCAACAAATGGATTGCCTTACATGTGTCACTTGTTCTATCTCGTTCTATGACAATAAACTACTCAAGAGACACTATCTTTACACAGGGCATGCCAATAGGGTTATTCAGCCACCTCAGGCGGTTCCTGATAATAAAGGACCCATGGGATTCAAATGTCATCGCTGTGTTAAAACATTTCAATCTAgatttcttcttaaaaaacattttcaggTTCATTATCGAGGAACCAATAAAGGTGCTTGTCAATTTTGCCTTCTAGAATTCGAAAACAAGAATGATATCCAGCAGCATGTTCTTGAAGTGCATGGAGCTCATTTATATAAATGCAGCCTATGTGATCGTACATTTATGTCAGAAACATTTAGAAATAGGCATGAAGCAAAACACAAAGGTCCCTTTGAATGTCAGGTctgcaatataaaatttattagtaaaaaatctCTGCTGTTACATAATGAAACTTATCACCAAGGAGAATCTGGTTCTTGTACATTGTGTGGAAAAGTGTTTGAAGATCCTTTAGCTCTTAGAAAACATGAAAGACGCCACTATTTTGAGAAGCAGTTGGATTGTGATGTGTGTAAGAAGAGGTTTAGAAACAAAGCTCTTTTAATCACACATTTGAAAATCCATGGAGATAAAATCAAAGCTAAATGTGATGTTTGCCAACTCGGGTTCACTACTGAAGAAGCATTAAAAGAACATAAATTTTCTCATATGAAGCCTGGAAGGTACAAATGCCCGAGATGTAATGTTTCTTTTGCAAACAAAGCGAATTTCTGGATGCATACAAAAACACATGAAGCTTGTTATGTTTGTACAGTTTGTAATAGAAGTTTTAGAGACACGTCTTTATTAGCTGTACACCGAAGAAAACATTGGCGTGTCAGGCCTTACCAGTGTCCACATTGTTCTCGCACATTTTCTGTACCTGCAACTTTGAGGAGACATCTGCATGTACATACTCGTATTTATCCTCATAAATGTGGTCTGTGTAAAAGGGGATTCCTCACAAGGCATGCATATCATAGACATACCGAAACAGTGCATGGTGTCTCTCACAGTTTTCCGCAAAGGAGGCCTAATATCCCTTCTTTGCCATTGAATGCAACCGATGAAGACATCTTCCAAGCTGCTGATACCCTTATTGCTGATGATtcattaatgtttaatgattatcaaaataaagaaattgagCAGGTATCATCAACTGATCTTATTACCAATGAAGTAGTTGTAGAAACAACAGAgttatttgatgaaattttgCATTAA
Protein Sequence: MVLRNDRNQLKQGCVALYVDSNFKNDSSSGTYQCQTCAIDEETRLEQEQPAQEENTGAELATEMPEFFKDPENNNEVRNLERNEEECVSYLRCEGCEEQFKLGDLTKHLCFIRGDTVEFVEVEAPTIQGKKSQPASVPLYCKDCGDQFFNIEDLRNHWDHTGHLRQVSTTAVELNKIRDKYKKTEATFKVVKQNFNIRAIIPGQNEEALRSADDYKDMFVKVSRNTDSIDDFVRKDGKECETCGIVFATKELLEEHQQMDCLTCVTCSISFYDNKLLKRHYLYTGHANRVIQPPQAVPDNKGPMGFKCHRCVKTFQSRFLLKKHFQVHYRGTNKGACQFCLLEFENKNDIQQHVLEVHGAHLYKCSLCDRTFMSETFRNRHEAKHKGPFECQVCNIKFISKKSLLLHNETYHQGESGSCTLCGKVFEDPLALRKHERRHYFEKQLDCDVCKKRFRNKALLITHLKIHGDKIKAKCDVCQLGFTTEEALKEHKFSHMKPGRYKCPRCNVSFANKANFWMHTKTHEACYVCTVCNRSFRDTSLLAVHRRKHWRVRPYQCPHCSRTFSVPATLRRHLHVHTRIYPHKCGLCKRGFLTRHAYHRHTETVHGVSHSFPQRRPNIPSLPLNATDEDIFQAADTLIADDSLMFNDYQNKEIEQVSSTDLITNEVVVETTELFDEILH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -