Acus055871.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073763.1:85399589-85401402[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0079 1.7 11.2 0.4 2 23 103 125 102 125 0.95 2 11 0.024 5.2 9.7 0.5 5 23 131 149 128 149 0.95 3 11 0.00012 0.027 16.9 0.4 2 23 156 177 155 177 0.96 4 11 0.19 41 6.9 2.6 2 23 184 205 183 205 0.96 5 11 2.6 5.6e+02 3.3 1.0 6 23 216 234 212 234 0.84 6 11 6.4e-06 0.0014 21.0 2.9 1 23 239 262 239 262 0.97 7 11 9.2e-07 0.0002 23.6 0.9 1 23 269 291 269 291 0.95 8 11 3.1e-07 6.7e-05 25.1 1.6 1 23 296 318 296 318 0.99 9 11 1.5e-06 0.00032 23.0 0.3 2 23 325 346 324 346 0.97 10 11 5.4e-08 1.2e-05 27.5 1.1 1 23 352 374 352 374 0.98 11 11 7.4e-07 0.00016 23.9 1.4 1 23 380 402 380 402 0.96
Sequence Information
- Coding Sequence
- ATGGATCTCTCATCAGTTGACACACCATTCTTGGCACATATTCTTCAGGGTTTTGTGAAGTATCTTGTCTGgGAAGGAAGATTAAAAGAAACTGTTGATTATACAAGGGAAAAGAAGTCAAAGTTGCAGTGTGATAAATGCCCATCAGCATTAAAGAcagatattatattaaaacataccAAAGAAGACTCTTCCGATGTCTGTCATTATGGTGCCAAATTTATATGCACTAAGTACTTGAGCAGGCTAGAGGATGAGGTGAGGCAAAGTTTGAAAGCTAGTTTACCTTCTGAAAATTCCGAATTGCAATGTAGCAAATGTACATCTGTATTCAAGAAGGATGTATTATTGAAAGACCATATCAAAGAAGCACACTCTACTTATGTTTGCCACTGTGGTGCGAAATTTGCATCTGCCAGGTACCTTGCAAGGCACGAGGCTAGGCACAATGCCAAGCCTACCATACCTTGTAAACTTTGTGGCAAGCTATTTATAACAACTTCAGAAATGAAAGATCATCTGAAATCCCACGAAGTTGGCGAGAAGCTTAACTGTCATTTATGTAGTTATGTTTCCTTGTACAAATCTAATATGGTCAGGCATTTGAAGAGGCATAACAAAGAGTATACGGTCTATTGCATTTCTTGTAATGTAGGATTTTTCTGCAAAGACGAGCTTAATAGgcatcaaattaaaaaacatggtGCTGAACCTTTTTCCTGCACTGTATGTAGAAAATCTTTTACCAGTAAGAGCTACCTAAATGAGCACAATAAAACTATGCATTTTACAACAACTAAAGATTTTCTTTGTGAAGAATGTGGAAAAGCCTTCAAAACTAAAACAGCCAACAGAAGACATATGAAAATCCACCTGGGTCTCAAGTATAAGTGTCAAATATGCAAGAAAAGTGTCAACAGTCCATATTCGTTGAAGAAACATATGAAGGTACACTTAGGAGAAAAGAATGTGGTGTGTCATGTGTGTGGTAAGGCATTCGTAGACAACAAGTACATGGCCGCTCACCTTCGCACTCACTCTGGAGAGCGACCCTATGAGTGTACAGAGTGTGGAAAGcggttcacccagcctacaACCCTCAAGATTCACCTGAGGTACCACACTGGTGAACGCCCATATTTGTGCCAGCATTGTGGCATTAGCTTTGTAACCAATAGCCTCCTTACTAATCATATTAAGTCTCATTCTAGTCAGTTTCTTTCAACATAG
- Protein Sequence
- MDLSSVDTPFLAHILQGFVKYLVWEGRLKETVDYTREKKSKLQCDKCPSALKTDIILKHTKEDSSDVCHYGAKFICTKYLSRLEDEVRQSLKASLPSENSELQCSKCTSVFKKDVLLKDHIKEAHSTYVCHCGAKFASARYLARHEARHNAKPTIPCKLCGKLFITTSEMKDHLKSHEVGEKLNCHLCSYVSLYKSNMVRHLKRHNKEYTVYCISCNVGFFCKDELNRHQIKKHGAEPFSCTVCRKSFTSKSYLNEHNKTMHFTTTKDFLCEECGKAFKTKTANRRHMKIHLGLKYKCQICKKSVNSPYSLKKHMKVHLGEKNVVCHVCGKAFVDNKYMAAHLRTHSGERPYECTECGKRFTQPTTLKIHLRYHTGERPYLCQHCGISFVTNSLLTNHIKSHSSQFLST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -