Basic Information

Insect: Arma custos
Gene Symbol: salm
Assembly: GCA_037127475.1
Location: CM073764.1:28106631-28117378[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.73 1.6e+02 5.1 0.0 3 20 64 81 63 83 0.90

2 10 5.6e-06 0.0012 21.2 0.9 1 23 321 343 321 343 0.98

3 10 1.1e-05 0.0024 20.2 2.1 1 23 349 371 349 371 0.98

4 10 0.07 15 8.3 3.8 2 23 653 674 652 674 0.98

5 10 6.7e-08 1.5e-05 27.2 0.6 1 23 680 702 680 702 0.97

6 10 0.00076 0.16 14.5 2.7 1 23 712 734 712 734 0.98

7 10 0.01 2.2 10.9 2.4 2 23 941 962 940 962 0.97

8 10 2.8e-07 6e-05 25.3 1.4 1 23 968 990 968 990 0.99

9 10 1.5e-06 0.00033 22.9 4.0 3 23 1102 1122 1100 1122 0.96

10 10 1.8e-07 3.9e-05 25.9 2.2 1 23 1128 1150 1128 1150 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.73	1.6e+02	5.1	0.0	3	20	64	81	63	83	0.90
2	10	5.6e-06	0.0012	21.2	0.9	1	23	321	343	321	343	0.98
3	10	1.1e-05	0.0024	20.2	2.1	1	23	349	371	349	371	0.98
4	10	0.07	15	8.3	3.8	2	23	653	674	652	674	0.98
5	10	6.7e-08	1.5e-05	27.2	0.6	1	23	680	702	680	702	0.97
6	10	0.00076	0.16	14.5	2.7	1	23	712	734	712	734	0.98
7	10	0.01	2.2	10.9	2.4	2	23	941	962	940	962	0.97
8	10	2.8e-07	6e-05	25.3	1.4	1	23	968	990	968	990	0.99
9	10	1.5e-06	0.00033	22.9	4.0	3	23	1102	1122	1100	1122	0.96
10	10	1.8e-07	3.9e-05	25.9	2.2	1	23	1128	1150	1128	1150	0.98

Sequence Information

Coding Sequence: ATGAATAAAAACGGAATCTGTTACAATTGGAAAGGCTTCAAACGGACCGACAGAGCTGATGAAGCAGTAAAAGTCCGAGCAACGACCACTATAAATGTCCGAAGAGGTTCGAACGAATTTGGGAGGATCGGTGAGAGCTGCTCCGGATCTGACGAGGAATCTCCTTCTGGTGAAGCAGTCGGACCAGCTTGCCCACAGTGCGGTGCCGAGTTCAGAGGATATCCAGAGCTAGCAGAACACAGTAAGCTATGCTTATTGGGCGAAGATGGTGGTAAGACAGACGAAGCAAGGCGGCAAGACGCTGAAAACAATAACAGCTTGGAAGAAGAAGAGCAAATCGTTTTTCCATTTGGTAGCCCAGGGCACGTAACACTCGAAGCACTACAAAACACCAAAGTAGCGGTAGCCCAATTTGCTGCAACAGCTATGGCAAACAATGCCGATAATCCAGCAGCTCTGCAAGAACTGGCAGTGCTGCAATCCACTCTATACACATTGCAGCACCAACAGATGATGCAGCTGAATTTGATACAGCAATTACAACAACAATTACAGATCACAAGGCCAAAGgacagcacaccaccaccaaTGGTGAAAAGGAGCAGAAGCCCGACACCAGTGAGCGTCAAACCGGAATCGCCGCCCGCACCGACACCAACTCCTCCACCAGCAGTCACTGTGCCGCCCCAGCCATCCCCGCCTGTCTCCCTCCCGCCCTGCTCCATTTCGTCATCGTTCGCCTCCTCTATCATCACCAACCTCGACCCTCCGCCTTCCCCGAGTGAGCCCAATACCCTTGAAATGCTGCAAAGACGTGCCCAAGAAGTTTTAGACAATGCTAGTCAAGGTTTGCTGGCTAATAACTTGGCAGACGAACTAGCATTCAGGAAAAATGGTGGCAAAGGGGGAGTATCTCCCTATGATTCAAGAACAGGTGGAAGAAACGAACCGTTCTTCAAACATAGGTGCCGTTACTGTGGTAAAGTTTTCGGAAGTGATTCTGCTCTACAAATTCACATAAGATCTCACACTGGTGAGCGACCTTTCAAATGTAACGTTTGCGGCAGCAGGTTCACTACAAAGGGAAACCTAAAAGTTCATTTCCAAAGACATTCAGCAAAATTTCCTCACATAAAGATGAACCCAAACCCAGTTCCTGAACATCTGGACAAATATCACCCCCCTTTGCTGGCGCAGATGGGTGCTCACCAAAGCCTCCCACCGGGGCCGCCACCTTTTCCTCCCCAGTTCACACCCCTTTATCGTCCGCCCCACGACCTCGTCCTCCCCCCTCAGAGGACACACGAACCTGTCAATAAGCCTATCCTCCCGGTTTCAGTATTCGGCCCTCGAATAGAACAAGAGGTGCCGGAAAACCTAAGCAGTAAGGCCCCGGACCAAGTTTCCCCAGAACAGGAATACAAAAAGGAGCCGACAGATGAGGAGCCACGGGAGGATAGATTGAGCCCTAAGCGGGAGGTGGAGGCGGAGGGAGAACTGGAGAGGTATCCATCGCCTCCAGGCTACGATGACTGCAGCTTAGATAGCAAGTACACCGGAGAAGACATCCCAGGAGACAGAGACAGCCCAGGAATGGAGAAGAACGAGGACAGTTTCCAGGACCAACCGGAGAACCTCTCTAATAAAAGTACGTCTGACTTAGGTCACTTATCTTTAACCCCAGATCACAGATTTCAACAGTCTGTTAACTTTCCTAACATAGCCTCACCTCCTAGTAGTACTTCTTCAGGTAGTGTTCATAGATTGACTCCGAGGGGTTTCCTTCCTAATGAGCCTGATCCTATAAAAGACCCTGCCATATATTCCAGTCTCCTTCCCCGCCCCGGCAGCACCGACAATTCTTGGGAGAGCCTCATCGAGATCACCAAGACGTCGGAAACGCACAAGTTACAACAATTAGTTGACAACATCGAAAACAAACTGACAGACCCGAACCAGTGTGTGATCTGTCATAGGGTATTGTCATGTAAGAGCGCCTTACAAATGCACTACAGGACGCACACTGGGGAAAGGCCGTTTCGCTGCAAGATCTGTGGTAGGGCATTTACTACAAAGGGTAACCTAAAAACGCACATGGGTGTACACAGGATAAAACCACCGATGAGAATGTTACATCAATGTCCTGTGTGCCACAAGAAGTTTACAAACGGGCTCGTCCTACAGCAGCATATCAGGCTGCACACCGGAGAGCCGACAGACCTCACGCCCGAACAGATCCAAGCGGCCGAAATCAAAGAATTCGCACCCCAACCCAACTTCCCAATACACTTCCCTCCTATACCTCAGCCCTCCTCGAGTCCAAAAGAAGAGAAGAATGACTACGGTGAGGAGGTCAGGGCTAGTTCCCTCAGTCCAATATCCGACGCCGCTTTCTCCACATCCATTACCGCTCTTGAGAATCAAGTTCGAACTATTACTACCATTGCCTCCCATTATATCCCCTCAAAATTTGTTAACGATAGTGACGACATGTCAAGTAACAAAGATTATAACCCTATTACAGTGAATGGAGACATGAAATCACCCGGTCAGAGCCCCAGAAGCGGTTCTGAAAGTGGGCCCTCACCAGCGGCGCTGCAATTGACACGAGAGTCTCCTGCGGCTTCCGAGTCCTCCTCACTGGGAGCCCTGGACCTGACACCGAGATCCTCCTCAGCCATGTTCCCGGGATTCTTTCCTCCCGCCAGCGGAGCTCCACTCATCACGTCAGCTCTGTCCTCGCTGACTTCCTCAGTCCTCACGACGACAGCTTTCAATCCCTTAGGCCTCGCAGTGGGGCCCCCagttcGAGGGAATACTACTTGCAACCTCTGTTTCAAAACATTTGCCTGCAATTCAGCCCTTGAAATTCACTACAGGAGTCACACTAAGGAAAGGCCATTCAAATGCACCATTTGTGACAGAGGATTTTCGACAAAGGGGAACATGAAACAGCATATGCTCACCCATAAAATACGAGACATGCCTCCACACCTGTTTGAACAGAAACAAGGAGGAGGAACACCCAGTACAACAGTTGTCAGCCCAGAAGGAAACTTGAACCCAAGTGTGCAGCAGCCACAGCCGCAGCCTAGCCTGCAACAACCGCTTCAGAATCAACAACATACACCACCTCAACCAAGTCAACCACCACAACCTGTTCCACAGGTCGAAGTGGTAGAGCCTTCACGGCCACCAAGTCCTCAACAGAAAATAGAACTTGGCGTGAAGAGATCTCCGCCACAGGCAGACACCCAGGCTATGCCTCTACCTAAACGACAGCCAAGCTTGCCCAAGCACTTGTGCCATGTTTGCAATAAGAACTTCTCCTCATCGTCTGCTCTCCAGATCCACATGAGGACCCACACTGGGGACAAGCCGTTCCGATGTTCTATCTGTCACAAAGCCTTCACCACCAAAGGAAACCTCAAGGTGCATATGGGAACGCATATGTGGACAAACGGAGCTTCGCGCCGAGGGAGGCGAATGTCTCTAGAGCTTCCTCAACTTCCCAAAGACACAGAGTTCCTTCACAGGCGGCCAGATCTCTTCTACCCATATCTCCCAGCCCCTTTCCTTAATGGGATCCATCAAAAGCTATCTGAATTGCCAATGGGCGGTGGTGGAGGTGGAAGCCATAATGGCATGATGGCTTTTGGAGGATTTCCATCAGAAATGAAGGGGGAACCTCGGTCTCCTGAGAAGCCACCTCATTCTGGAGCAACTCCACCTTCCCTCTGGGATCTACACTTTGAAAGAAAACCAGAGGAGCAAGCAATGCCACCACCTCCTCGAGGGGAAGGTTTGGCCGCATGA
Protein Sequence: MNKNGICYNWKGFKRTDRADEAVKVRATTTINVRRGSNEFGRIGESCSGSDEESPSGEAVGPACPQCGAEFRGYPELAEHSKLCLLGEDGGKTDEARRQDAENNNSLEEEEQIVFPFGSPGHVTLEALQNTKVAVAQFAATAMANNADNPAALQELAVLQSTLYTLQHQQMMQLNLIQQLQQQLQITRPKDSTPPPMVKRSRSPTPVSVKPESPPAPTPTPPPAVTVPPQPSPPVSLPPCSISSSFASSIITNLDPPPSPSEPNTLEMLQRRAQEVLDNASQGLLANNLADELAFRKNGGKGGVSPYDSRTGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPVPEHLDKYHPPLLAQMGAHQSLPPGPPPFPPQFTPLYRPPHDLVLPPQRTHEPVNKPILPVSVFGPRIEQEVPENLSSKAPDQVSPEQEYKKEPTDEEPREDRLSPKREVEAEGELERYPSPPGYDDCSLDSKYTGEDIPGDRDSPGMEKNEDSFQDQPENLSNKSTSDLGHLSLTPDHRFQQSVNFPNIASPPSSTSSGSVHRLTPRGFLPNEPDPIKDPAIYSSLLPRPGSTDNSWESLIEITKTSETHKLQQLVDNIENKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFRCKICGRAFTTKGNLKTHMGVHRIKPPMRMLHQCPVCHKKFTNGLVLQQHIRLHTGEPTDLTPEQIQAAEIKEFAPQPNFPIHFPPIPQPSSSPKEEKNDYGEEVRASSLSPISDAAFSTSITALENQVRTITTIASHYIPSKFVNDSDDMSSNKDYNPITVNGDMKSPGQSPRSGSESGPSPAALQLTRESPAASESSSLGALDLTPRSSSAMFPGFFPPASGAPLITSALSSLTSSVLTTTAFNPLGLAVGPPVRGNTTCNLCFKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKGNMKQHMLTHKIRDMPPHLFEQKQGGGTPSTTVVSPEGNLNPSVQQPQPQPSLQQPLQNQQHTPPQPSQPPQPVPQVEVVEPSRPPSPQQKIELGVKRSPPQADTQAMPLPKRQPSLPKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCSICHKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLELPQLPKDTEFLHRRPDLFYPYLPAPFLNGIHQKLSELPMGGGGGGSHNGMMAFGGFPSEMKGEPRSPEKPPHSGATPPSLWDLHFERKPEEQAMPPPPRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01096009;
90% Identity: iTF_01298618; iTF_00715293;
80% Identity: -