Acus054108.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- -
- Assembly
- GCA_037127475.1
- Location
- CM073763.1:59480073-59481754[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.92 2e+02 4.7 3.7 1 23 44 67 44 67 0.94 2 14 0.00048 0.1 15.1 0.2 3 23 84 105 82 105 0.96 3 14 0.0012 0.25 13.9 0.1 2 23 111 133 111 133 0.96 4 14 0.00024 0.051 16.0 2.1 2 23 136 157 135 157 0.96 5 14 4.6e-05 0.0099 18.3 2.2 1 23 163 185 163 185 0.95 6 14 2.5e-06 0.00053 22.3 2.5 2 23 192 214 191 214 0.94 7 14 0.0022 0.47 13.0 0.4 5 23 227 245 226 245 0.95 8 14 0.00018 0.038 16.4 1.6 2 23 251 273 250 273 0.97 9 14 0.0045 0.96 12.0 0.2 2 23 291 311 290 311 0.96 10 14 0.79 1.7e+02 5.0 1.3 5 17 321 333 319 339 0.84 11 14 2.8e-06 0.00061 22.1 0.4 1 23 347 369 347 369 0.99 12 14 2.9e-05 0.0063 18.9 6.4 1 23 375 397 375 397 0.97 13 14 3.2e-06 0.00069 21.9 2.7 1 23 403 425 403 425 0.98 14 14 0.0023 0.5 12.9 9.1 1 23 431 453 431 454 0.96
Sequence Information
- Coding Sequence
- ATGCCTCCCAGAGGAGAACTCTCAGGACAAGAAAGCCTTGGAACTACTGTCAATTCAGTCTGGCTTCCCGAgGCTTCAGTCATTTCAGATCCAATTTGGGTTGATAAGCAGGAAGACACAAAAAAGAAGTTTCCATGTCTTCATTGCCATGAGGAGTTCTCCTGTCCCAAGGAAAGGAGGGTTCATATTGTTACTTTGCACTGTAcagcagaaaattctgaaagtAAAGCATTTCAAAAAGAAGTGATTTGCCTAAAATGTGGTCTCCAACTTCAATCGCAAAAAGAACTAAAAGCCCATATGAGAACAGAGCATAAAAGGGTTTCTAGGCAATGTACAGTCTGTAATGAGGAATTTGTTACCCAAGAACTTTATGCAgaacatttattaaaagttCACCCTTTGGAATGTAGGACTTGTGGTAAAACATTTCATACCAAGAACAGTCTTTATATCCATGCTAAAATTCATATGTCTGTAAAACCACATGCATGCACACTTTGCTCTAAAACTTTCGTTACCAATCAGAAATTGAAAGAACATATGAATGGTCATACTGGTTTTGCCCCTCTTCAATGTAATTTATGTGATAAAAAGTTTAAGCGCTATTCAAAtctaaaacaacataaaaacaatgcGCACTtgcaagttaaaaaaaagtccAAAGATTATTTTTGCGAGTGTGGAGAAACTTTTAACACAAAAAAGAAGTTGGAATGGCACAAAGAAATACATGAATCTAAACCGAAACAATGTATGTATTGTAGTGAAAGGTATGTGCATCTTGCTAGCTTGACTAGACATATTCGTAAAGCTCATGATAGTCACTTTATTCCTCAAACTGAAtcgaatattaagaaaaagaatGTTTCTTGCCCGATTTGCAATATGGTATTCATGGAGAAATCGTTGAAATTACATATGTTACAGCATAGTTCTCCTAGGCAATATGGGTGTATAGTTTGTGGAAAACGTTTTCAAACTAAATGGAACTTACACTTTCATAGGTGGACTCATGCGTCAAGGATGTCGAAGCCTTTCAAGTGTTCCATGTGCAAAGGTGCTTTTGTAAGACTCTCAGAGCTACAAGCACATCTTCGAACACATTACGGAACAAAACCTTTCACTTGTAATCATTGTGGTCGACAGTTCAACCGGAAGCACAATTGGCAGAGGCATGAAAAGGAGCATTTACAAGCTAAAAAATATACCTGTAATGAATGTGGTAAATCCTTTCACCGCAGCTATTATTTAGTAGACCATTCACGAGTACATACAGGCATAAAACCGTATTCTTGtcatatttgtaataaaacttCTTCTACTAAGTCCAATCACAATAAACATGTAAAAACTCACCATGCCCGAGAACCTATCAACTCAGAATCATAA
- Protein Sequence
- MPPRGELSGQESLGTTVNSVWLPEASVISDPIWVDKQEDTKKKFPCLHCHEEFSCPKERRVHIVTLHCTAENSESKAFQKEVICLKCGLQLQSQKELKAHMRTEHKRVSRQCTVCNEEFVTQELYAEHLLKVHPLECRTCGKTFHTKNSLYIHAKIHMSVKPHACTLCSKTFVTNQKLKEHMNGHTGFAPLQCNLCDKKFKRYSNLKQHKNNAHLQVKKKSKDYFCECGETFNTKKKLEWHKEIHESKPKQCMYCSERYVHLASLTRHIRKAHDSHFIPQTESNIKKKNVSCPICNMVFMEKSLKLHMLQHSSPRQYGCIVCGKRFQTKWNLHFHRWTHASRMSKPFKCSMCKGAFVRLSELQAHLRTHYGTKPFTCNHCGRQFNRKHNWQRHEKEHLQAKKYTCNECGKSFHRSYYLVDHSRVHTGIKPYSCHICNKTSSTKSNHNKHVKTHHAREPINSES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -