Acus026417.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- ZFX
- Assembly
- GCA_037127475.1
- Location
- CM073760.1:81969464-81975630[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.1e-05 0.0089 18.4 3.3 1 23 6 28 6 29 0.96 2 20 0.11 24 7.6 4.4 1 23 35 57 35 58 0.95 3 20 0.00031 0.067 15.7 2.7 1 23 64 86 64 87 0.95 4 20 0.049 11 8.8 0.7 1 23 93 116 93 116 0.97 5 20 0.032 6.9 9.4 0.5 1 23 122 144 122 145 0.95 6 20 0.00097 0.21 14.1 2.6 1 23 151 173 151 174 0.95 7 20 6e-05 0.013 17.9 2.8 1 23 180 202 180 203 0.96 8 20 0.0044 0.94 12.1 4.9 1 23 209 231 209 232 0.95 9 20 0.00062 0.13 14.7 1.4 1 23 238 261 238 261 0.95 10 20 0.043 9.2 8.9 3.6 1 23 267 289 267 290 0.95 11 20 0.0002 0.043 16.3 4.0 1 23 296 318 296 319 0.95 12 20 0.01 2.2 10.9 1.6 1 23 325 347 325 348 0.95 13 20 0.00043 0.093 15.2 4.3 1 23 354 376 354 377 0.94 14 20 0.00015 0.033 16.6 0.6 2 23 384 405 383 406 0.94 15 20 0.00015 0.033 16.6 1.3 1 23 412 435 412 435 0.97 16 20 0.0027 0.58 12.7 0.6 1 23 441 463 441 464 0.95 17 20 0.037 8 9.1 3.4 1 23 470 492 470 493 0.95 18 20 0.00011 0.025 17.0 3.6 2 23 500 521 499 522 0.95 19 20 0.00079 0.17 14.4 0.1 1 23 528 551 528 551 0.95 20 20 0.4 87 5.9 0.3 1 13 557 569 557 573 0.85
Sequence Information
- Coding Sequence
- ATGCATGTAAAACCATATCAATGCACTCATTGTGAGTACAGGACTGCACAGTCTGGAAATTTAAAAACGCATATTATGGTACATCATACCAAAGAGAAACCACAcaaatgtcctcattgtgaataTAGAGCCCGACAGGTTGTGCAAATTAAGACACACATTATGTCACACCATACAAAGGAaaaacctcatcaatgtccccATTGTAAATATAGTGCAGTGCAAGCTGGCAACTTACGGACTCACGTTATGATTCATCATACTAAAGAAAAACCTCATCAGTGCCCTCAATGTGAATATAGAGCTGTTCAACTAATACAGATCAAAACACACATAATGACACGCCACACTAATGAGAAACCCTACCAATGTTCACGTTGCGAATATAAAACCGCTATAGCTGGCAACTTGAAAACTCATGTCATTGCTCATCACTCTAAAGATAAACCTTTTCATTGTCTTGATTGTGAGTATAGTTCTGCCTATAAGGCAAACTTGAAAACTCATATTATGGTTCACCATACAAAAGAAAAGCCCCATAAATGCCCACATTGTGATTATTCTACTGTCCTCCCTGCCAACTTGAAAACACATATTATGATTCATCATACAAAAGAAAAACCGCATGTTTGCCCATACTGTGAATATTGTGCTACACTAGCTGTGCAGCTAAAACATCATATTAGGATCCATCACATATTTGAAAAACCACACCAATGCCCCCATTGTGAGTATACTGCAGCTCATGCTGTCAATTTAAAAACACATATTATGGCACTCCATACTAAAGAAAAACCACAtaaatgtccacattgtgaatatagAGCTGTCCAGGCTGGTAATCTTAAATTTCATATCATGTCCCATCATACTAAAGAAAAACCGCACAAATGTCCTCAATGCGACTATAGTACTGCACATACAGGAAACCTAAAGACCCACATACTGGTTCATCATACTAAagaaaagcctcatcaatgcCCTTATTGTGATTATAAAGCTGTCCAAATAGTCCAAGTTAAAACACACATTATGTCACATCATACAATGGAGAAGCCACACCATTGCCCCCATTGTGATTATAGAGCTGTGCAGCCTGGAAATTTAAAAACTCATATAATGGTACATCATACAAAAGAAAAGCCTTTACAGTGCTCTCAATGCGAATACAGAACAGTCCAGCCTGGCAACTTACGAACTCACATTATGGTTCATCACACCAAagaaaagcctcatcaatgcccacattgtgaatataaagctGTTCAACCTGGCAATTTAAAAACTCACATTATGTCCCAGCACACTAAGGAGAAGCCTTTTCAATGTCCCTTTTGTGATTACAAAGCTGTTCAGTCTGCTCAAGTGAAAACACATATTATGGCTCATCATACACATGAAAAGCCCCACCAATGCCCTCACTGCGAATACAAAGCTGTTCAGCTTGTTCAAGTCAAAACACACATAATGTCCCATCATACTCTTGAGAAGCCGCAGCAGTGTCcacattgtgattataaatgtgTTCAGGCAGGTAATTTGAAAACACACATCATGGCTCACCATACAAAAGAGAAGCCATTCCAGTGCCCTTATTGTGAGTTCAAGGCTATACAGAGTGGGAACCTCAAGCTACATATCATGGCTCTTCATACAAAAGAaaaacctcatcaatgtccacattgtgatTATCGTACTGTTCAGAATGAATTTGTGACCTTAAAGAAGGAATTGAAACAGCAGTTGTTTCAAGGATTAGCGGTTATTCAGCAGGTACAGGAAAAAGTAAACGAAGAAAGAAAACAGGGAAATGCTGAAATTCCATTTAGGGCATCTACATCTGGGGTTAGTAAAGCTCCAATAGCACAAAAGAATAtgccaaaaattataattaaaaatattcctgagGAGGCTACTAAAGATAACCTCGCGGTCACGTTGTTGCAACAAAACGAGTGGAACGTGGAGTTCGAAGAGGTTAGGGTGCTATTCATCACCAGACCGAGAGAAGGATCCAAACGGCGAAATGCGGTACTACAAGTCAGCCCGCGACTGAGGAGGTCACTTCTAGAAGGGAGAATAAAGTTATGGTATGCTATCTGCTATGGCGAAGACTTCATCAGCGTCCGATGA
- Protein Sequence
- MHVKPYQCTHCEYRTAQSGNLKTHIMVHHTKEKPHKCPHCEYRARQVVQIKTHIMSHHTKEKPHQCPHCKYSAVQAGNLRTHVMIHHTKEKPHQCPQCEYRAVQLIQIKTHIMTRHTNEKPYQCSRCEYKTAIAGNLKTHVIAHHSKDKPFHCLDCEYSSAYKANLKTHIMVHHTKEKPHKCPHCDYSTVLPANLKTHIMIHHTKEKPHVCPYCEYCATLAVQLKHHIRIHHIFEKPHQCPHCEYTAAHAVNLKTHIMALHTKEKPHKCPHCEYRAVQAGNLKFHIMSHHTKEKPHKCPQCDYSTAHTGNLKTHILVHHTKEKPHQCPYCDYKAVQIVQVKTHIMSHHTMEKPHHCPHCDYRAVQPGNLKTHIMVHHTKEKPLQCSQCEYRTVQPGNLRTHIMVHHTKEKPHQCPHCEYKAVQPGNLKTHIMSQHTKEKPFQCPFCDYKAVQSAQVKTHIMAHHTHEKPHQCPHCEYKAVQLVQVKTHIMSHHTLEKPQQCPHCDYKCVQAGNLKTHIMAHHTKEKPFQCPYCEFKAIQSGNLKLHIMALHTKEKPHQCPHCDYRTVQNEFVTLKKELKQQLFQGLAVIQQVQEKVNEERKQGNAEIPFRASTSGVSKAPIAQKNMPKIIIKNIPEEATKDNLAVTLLQQNEWNVEFEEVRVLFITRPREGSKRRNAVLQVSPRLRRSLLEGRIKLWYAICYGEDFISVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -