Acus017144.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- PGBD3
- Assembly
- GCA_037127475.1
- Location
- CM073759.1:185065866-185069195[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.1e-08 9.4e-05 24.1 0.0 4 41 214 252 211 254 0.83
Sequence Information
- Coding Sequence
- atgaaaggaaatgataaacaaaatttgataGATCCCAAGCTGGGAATCCGACCTTGGTATCCCCACCTCTTACCTAACAGTGGGAGGGATTCTTTTGATGAAGTAGTCGACAACAAGAAAAAAGTTGCAATAGTAAAGTGGACTGACTCTAAAGTTGTAACCCTCGGATCATCTTATGTTGGAGCAACTCCTGTAGGTATAGTTAATCGGTGGTCTAGTGAGGAGAAAAAACGCGTTAATGTAGCCTGCCCTAAAATAGTAAAAGAGTACAACTCATTTATGGGAGGTGTAGACAAGGCGGACATGCTCGTTGCTCTCTACAAGACACCGCTTCGAACATTTAAATGTCTTTTGCGCCATCGTCGCAGATCAACGAATGGTAGCACTCTGCCCTCCTCTAAACCATGCGATGATGTTCGCCAAGACGGGGTTGACCATCTTCCCATATTCACGAGCAGAGGCAAATGCAGAATGTGCCACAACAACCAAACTTTTGTAATCTGCAAGAAATGTAATATGAGGCTTTGCATCCACCGCGATCGAAACTGTTTCTTCTCTTATCATACAGTCCGAGAAGCTGGGCTGTGGATCGAGATGAAGagagtTAGAACAACTGATGATGCTCATTGGACTTCCAATCAGTTGGCTGAAGCACAAGCTGATATCAATAATATAGCAGGGATCAGTATTCGGGTCGCAGCCCGAATTCACAACATCCCTGTAAGTACCCTACAGAAGAGGAATAAAACAGGAATTGATGGTGCTCCTCGTCTCGAATGTAAGCCTGTTTTTTCTGTGAAAAAACATTCTACAATATTGACCGAAACACCTGAAAAAGACATTTTGGAATCAAAAAGAGCTAAAAGAAAGGAGAGAGAAACCAAGAGACGAGAAAAAGCTAGAAAGAGTCTCTTCATTGAAACAAAGAAACCTGTTAGAAGAAAGCCTAAGATCGAAAATTTGTCTTCTTCAAGATCAGAAGCAGAAGAATATTCTCAACTTTGTCAAGACTCTTCAGATGATGAAAATTGGCATCCAGGAGCCTCTACAGATTCTGATAAGACTGGTGAAGAAGAAAACAGTCCTGACATTGACTCGAGTGACGAAGAAGATACATTTGTTGCCGGTGTTGAAGATAAAAGAATGGACGTCTGCACTACTTCTCAAGAAGACTTGGAGCTTGCAGGACCATCTGAATGCAAAAAGCTGGTCGTGAAAGAAATTCTAACCGAGAAGCTGTCTGCGTTGTTAGATTTGTGCCAAATATCAGACAGGAATGCTACTCGGATATTAACAGCTACCATTGAAGCTCTGGGAAAGAATTCCGATGACGTGTggcaagTGGACGTAACTGAAAAGGACCCTATTGTCGTTCACTGGAACGGGAAACTTTTGCCAGGGGTTTTAAAGAAGTTGTTGAAGGAGAGAGTTGCGGTTATAATTTCCAATGGAGACAAGGAACAACTTTTAGGAGTACCAGTAACAGACAGCAGCAGTAGTGAAGAACATCGACTGTGGAGATTCAAAGGAACCTGTACCATTCTAGAGTACTTATTGGGTAAAGAATTACTCCATTTGGCCTGTCGGCACCGCATTTACGAAGTTGAGCTGCGGGGCGTTTTCGATGTTAAATTATGTCCAACAACTGATCCCGAACCGGACGTCTTCAAACGCTTCCAGAAGAAATGGCTGGCACTTCAGAAGGAACTATATCAACCGGCCGTCGCCAGCGAACATGTGAGAAAGCACTTGCCACCGGAGTTTCTGACATTATAA
- Protein Sequence
- MKGNDKQNLIDPKLGIRPWYPHLLPNSGRDSFDEVVDNKKKVAIVKWTDSKVVTLGSSYVGATPVGIVNRWSSEEKKRVNVACPKIVKEYNSFMGGVDKADMLVALYKTPLRTFKCLLRHRRRSTNGSTLPSSKPCDDVRQDGVDHLPIFTSRGKCRMCHNNQTFVICKKCNMRLCIHRDRNCFFSYHTVREAGLWIEMKRVRTTDDAHWTSNQLAEAQADINNIAGISIRVAARIHNIPVSTLQKRNKTGIDGAPRLECKPVFSVKKHSTILTETPEKDILESKRAKRKERETKRREKARKSLFIETKKPVRRKPKIENLSSSRSEAEEYSQLCQDSSDDENWHPGASTDSDKTGEEENSPDIDSSDEEDTFVAGVEDKRMDVCTTSQEDLELAGPSECKKLVVKEILTEKLSALLDLCQISDRNATRILTATIEALGKNSDDVWQVDVTEKDPIVVHWNGKLLPGVLKKLLKERVAVIISNGDKEQLLGVPVTDSSSSEEHRLWRFKGTCTILEYLLGKELLHLACRHRIYEVELRGVFDVKLCPTTDPEPDVFKRFQKKWLALQKELYQPAVASEHVRKHLPPEFLTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -