Acus049365.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Arma custos
Gene Symbol
PGBD4
Assembly
GCA_037127475.1
Location
CM073762.1:103847672-103860745[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.2e-08 7e-05 24.5 0.0 9 40 1072 1103 1066 1107 0.91

Sequence Information

Coding Sequence
ATGATTAGGAAAAGACCATTGACTCAAAGTGAAATTGAGTACTACTTAAATCTAAGTGATTCAGAATTTGATGAGAATTCAAGTGATAGTGAAGATGAAGTCGTCTCAAAAACTGAAGATGATCCGGAACCTGAAGATAACGCCGATGATTCTCAAGCAACAACATCAAATGCGAATGATAATTTGTGGACAGAAACTCAGCAGAGtcctgaattatttattttcaaagaaaaGGTTGGTGTGAAATTGGATACGACAAATTTTACATTACAAACGCTAGTGGACTTATTTTTTTCGGACGATTTTCTTGCATTACTGGTTGAACAAACTAATTTATATGCTGCGCAAGAAATTGAAAAACGCACAACAATAAAGAAAACCAACAGGTTATCAATTTGGCAAAACGTTAGTGTTGCTGAGATGAAAGTTTTTATTGGACTTCTGCTGCAAATGGGACCTTGCTCTTTTCCATCAATTGAACATTACTGGAGCACAAACGAGCTATATAATGTACACTTTTGGCGCTCACATATGAGTCGAAATCGATTCCAGTTATTACTTCGTTATTTTCATTTGGTTGATAACTCAATACCATCTACCGACAGATTATACAAGCGAAATGGTCTTGTTACTGTTTGCAAATGGAAAGACAAGCGAGATGTCCTTTGCATTTCAAACATGCATGTTGTTGAAATGATAGAAGTCCCCAATCGCAATGGAAAAATTTCTATGAAACCGAATATAATTCGAGATTACAACAATGGAATGTCTGGCATTGACCGATCAGATCAAATGCTTTCAGAGGAATTCGTGCTCGCATTGATTGGACAAGAAATTCAACACGTTACGAAAAAGAGTAAATTGCAAAGTATCCATTATTTAGAGAGTTTACCGCCTACCGAAAAAAAACAGCGTCCAACGAAACCATGTCGCATATGTAACCAAGGGAAAAAACGCCGAGAAACGCAGAATTTTTCGGCTATAAAGGCCCTTGGTATAGATAatgaagctgatttttttaaacttaacatCGCACTGGAAGCGTTACACTCGGACATAAGACAGCTTTATGAAGAGAAGCAACAAGGACAAGAACTTCCCACTTATGAATCACTTATTAGCTCCATTCATCAGAGATGTCAAATCCTCGAACTTTCGGATTCAAATATGGCAACCGCTGCTCATGAGAAAACTAATATTTTCGCCGGGAATCGACCCAATTCAACAGGGAAAGAAGAGATATATAGTCGGGACGATAAGAGAAGATCGCAATCGCGAATATTCGTAAATCGGTTGCGCAAATATTTTACAAGAGGGAGGGACAACAATGGACCTTTGTTACCAGTAAAAAAAGTGACACAACGTGTGGCAGACGCATTAGAAATTGGCAGGAATACTGTGGGCAGAATTACGAAAGATGAAGAAGTCTCGACTCCAGGGAAAAAAAGACCTCGCCCAAGCCCTAACAGAGTACATTGGACAATTTCAATGAATCTGCATTTAGAAACCATGTGTATGGATGAGACCTGGGTGAACGCTGGACACACTGTAGGGAAAAGTTGGAGTGATGACTCTTTACAATCATCGAGGAAGGAGCCAACAGGCAAGGGGGACAGGCTAATTTTAACCCAAGCAGGTACGCTGGAAGGGTTTGTCCCTGGAGCCCTTTTGTTGTTCAGGTCAAAGAAAGCGTCCACATTCAAAGAGTGCACCCTAAAGAAGGCCGAACTGTTGACCATAGTAAAAAgtcaaaaaaattcttataagaCCTACGAGATCGATCATTTAGCCAAAAACTCCGGCCATGAAGTGTTGAGGCTTCCCCCGTATCACTGCCAATTCAACCCTATTGAATTGATTTGGGCACAAATAAAAGGAGACGTCGCAAGAAGCAATAAAACCTTCACAATTGCAGAGGTTGAAAAATTAACCAGAGAAGCAATTGGGAATGTGACTCCTGAGAAGTGGAAAAAAGTAGTAGCCCACACAATGAACGTTATTGACCAAGCATGGAAAAAAGAAGGAGTTTTGGAGGAAAGAGTTGACGAAATGATCATATCAATGAGCGGAACGTCATCATCATCCACAGCATCGGATAGTGCTGATGACGCTGGAACTGAAAGACCCTTCAGCCTGGAATCGGGAACAGAACATTCTTGGAGTCCGGAACAGGGAGCAGGACCCAGCGGAATTGAGGGGGTTTACCCCCTCAGCACCTTTGCCTTTACAGCACTCTCACCTAAAGAAAGAGCTGATGTAATTCGAAAGGGCTATCGCTCGGACTCGAACTCGCTGATTGTAAAAGAATTATGGATCGTCTGCGTGAGTCATGGAGCTTCAAaagaagacaTAGCCAAGTGCTCGGCGATTATTGATTTCCAATGCTATGACTCGAACTCGCTGATTGTAAAAGAATTATGGATCGTCTGCGTGAGTCATGGAGCTTCAAaagaagacaTAGCCAAGTGCTCGGCGATTATTGATTTCCAATGCTATGACTCGAACTCGCTGATTGTAAAAGAATTATGGATCGTCTGCGTGAGTCATGGAGCTTCAAaagaagacaTAGCCAAGTGCTCGGCGATTATTGATTTCCAATGCTATGACTCGAACTCGCTGATTGTAAAAGAATTATGGATCGTCTGCGTGAGTCATGGAGCTTCAAtgCTATCAACGGCTTTCCAGGAAGAAAGAGATAGAAAGATAAAAGAAGAGTTGTTCCAGGGTCTCACTAATGCAGAGTTAACCCAACGCGTTGGAGAAACACTTCTCAACAAACCTTTACCATTATCAGTATCCACACGCGGCATCGGATTCGGAACGCAAATGATTTTTCATACAGTTCAGAAGTACAAATCAACCATTGATCAAAAGAGTAGCGCTCCGGCTGTCGTAGGAGAAGGACCTGTGTCAGTCGAGCTCCTGAAGATTATCCCCACCTTCCTAGTGGCAGCGCGGAaatgcgctgttgccacatctcatttACAACGTTGCCACATCGTCCAATTTGACCTAATTGAACCCATCAAGGTCAAAACACACCTGCCATCACGTCACAAGGTCATCCCCTTCGCCCTGACAAGGACGGTCAATGACCTAAAGGTCACACCAGACCCTCCTACGGCAGGGCTCCAGACAAGGAAGAAGATGCCTCGAAAATATGTTGCAAAGAACATTCCTAAGAAGTACAGCACTGAGTTACTGGACCAAGTACTTGAAGACATTCGTCGAGGTACTATGACTGCCCACAGAGCACACCAGCTTTATGGCATTCCGAGGATGACGTTGTATTCAAGGCTTAACGGTACTAGAGGTAAGGAAAAAGGTTGTGTTCGAGGTAGAACGACTGCGATTCCAGCAGCTGAAGAAAAAAACTCGCTTCGGCTTTGA
Protein Sequence
MIRKRPLTQSEIEYYLNLSDSEFDENSSDSEDEVVSKTEDDPEPEDNADDSQATTSNANDNLWTETQQSPELFIFKEKVGVKLDTTNFTLQTLVDLFFSDDFLALLVEQTNLYAAQEIEKRTTIKKTNRLSIWQNVSVAEMKVFIGLLLQMGPCSFPSIEHYWSTNELYNVHFWRSHMSRNRFQLLLRYFHLVDNSIPSTDRLYKRNGLVTVCKWKDKRDVLCISNMHVVEMIEVPNRNGKISMKPNIIRDYNNGMSGIDRSDQMLSEEFVLALIGQEIQHVTKKSKLQSIHYLESLPPTEKKQRPTKPCRICNQGKKRRETQNFSAIKALGIDNEADFFKLNIALEALHSDIRQLYEEKQQGQELPTYESLISSIHQRCQILELSDSNMATAAHEKTNIFAGNRPNSTGKEEIYSRDDKRRSQSRIFVNRLRKYFTRGRDNNGPLLPVKKVTQRVADALEIGRNTVGRITKDEEVSTPGKKRPRPSPNRVHWTISMNLHLETMCMDETWVNAGHTVGKSWSDDSLQSSRKEPTGKGDRLILTQAGTLEGFVPGALLLFRSKKASTFKECTLKKAELLTIVKSQKNSYKTYEIDHLAKNSGHEVLRLPPYHCQFNPIELIWAQIKGDVARSNKTFTIAEVEKLTREAIGNVTPEKWKKVVAHTMNVIDQAWKKEGVLEERVDEMIISMSGTSSSSTASDSADDAGTERPFSLESGTEHSWSPEQGAGPSGIEGVYPLSTFAFTALSPKERADVIRKGYRSDSNSLIVKELWIVCVSHGASKEDIAKCSAIIDFQCYDSNSLIVKELWIVCVSHGASKEDIAKCSAIIDFQCYDSNSLIVKELWIVCVSHGASKEDIAKCSAIIDFQCYDSNSLIVKELWIVCVSHGASMLSTAFQEERDRKIKEELFQGLTNAELTQRVGETLLNKPLPLSVSTRGIGFGTQMIFHTVQKYKSTIDQKSSAPAVVGEGPVSVELLKIIPTFLVAARKCAVATSHLQRCHIVQFDLIEPIKVKTHLPSRHKVIPFALTRTVNDLKVTPDPPTAGLQTRKKMPRKYVAKNIPKKYSTELLDQVLEDIRRGTMTAHRAHQLYGIPRMTLYSRLNGTRGKEKGCVRGRTTAIPAAEEKNSLRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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