Acus063619.1
Basic Information
- Insect
- Arma custos
- Gene Symbol
- tc3a
- Assembly
- GCA_037127475.1
- Location
- CM073764.1:67410182-67418234[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-10 7.5e-07 30.8 0.1 4 39 18 53 16 59 0.90 2 2 0.004 5.3 8.9 0.0 2 41 174 213 173 216 0.86
Sequence Information
- Coding Sequence
- ATGGTCCacaaatacaagaggaaaagcGTGCAGCAGTCATGGGGTGCGGGTGCGATGCAGAGAGCTATAGAAGCGGTCACAAATGATGGAATGGCCTATTCAACTGCGGCCAAAACGTTCTCCGTTCCAAGAAACACTCTGAAGAGGAGGGTCCTTGGTAAGAATATTGATGCCAAGGGCAACAGAAAGGTTCTCGGGAAGTACCGTGCTGTTTTCACAGAAGAACAAGAAGCAGAATTGGTACGACACATACTGGATTTGGAGGTTCGTTTCTTTGGCGTCACGATTTTAGATCTTCGCTCTTTAGCATACAGCCTAGCTGAAAAAAATGGCATTCCGAACAATTTtaacagagaaacaaaaatGGCTGGCTTAGACTGGGTTGCTGGATTCAGACATCGGCACCccgaaattattttaagaaaaccaGAGCAGACCTCTGCAGTTAGGGCTCAGGCATTCAATGAACACAACatggtgCGTTCTAAGCAAAGAACAACTAATAAAGCCTCGTGGGATGAAAATACAATGAAAAGGGCTTTTCAGCTGGTTCAAGAAGGGCGGTCTGTAAAAAGCGTAGCTGCCGAATTGAATATTCCCAGAATAACCTTGCATGACCGTCTAAAATCAGGATCTACAGCAAAACCAGCCTTAGGACGAAAATCTGTCTTTACACCAGACCAAGAATCAATATTTCTTGATCATGTAAAACAATTGGCAAACACTGGTATTACCCTCACTGATTTAAGGAGATTAGTTTTTGATCTGGCCGAGTCTTTAACGATAAAGCATAATTTCAACAAACACACAAAAATGGCTGGAGAGGACTGGCTTGCTGGATTCCGAAGAAGAAACCCTACTGTGACTTTAAGAAAATCCTCAGCAACTAGTTTGAATAGAATTCTTGCTTTCAACAAAGATGAAGTAGAAGAGCGCCGTTTCATTTCTTCACTCCACAAGGTCGGGATGAGTTGTAGGGAAATAGCCCGCCGAATCAAGCGGAGTTTTTCATCGGTCGCGAAGTTTATTCGGCACGGTGAGACATACGGAACCCGCCGTTCAACTGGGAGGCCCCCTGCTTTGACATTACGAGAGAAACGGAATATTCTTCGAATCGCATCCAACTCTTGTAAAACAGCCAGAGCAATTGCTGATGAAGCTGGAGGTAATAGGTGTCTGGCCTATGGCTGTAAGAGACGGACTAGTATAAATGAAACAGGAATGGCTTTTCATAGGTTTCctaaaaatgaagaattaaaggaAAAGTGGGTAAAAGCTGTGCGTTGGGAAAATTGGACTCTGAGGCCTTATTCAATCATTTGCTCAGAGCATTTTCTTGAGAAATTTGTCAACCGAACATCAGCATGCGGTAGAATTGAGCTGAGGGAAAATGCTATTCCGACTGTATTTCCGAGCTATCCATCATATTTACAGACTCAAGACAAGGTATGA
- Protein Sequence
- MVHKYKRKSVQQSWGAGAMQRAIEAVTNDGMAYSTAAKTFSVPRNTLKRRVLGKNIDAKGNRKVLGKYRAVFTEEQEAELVRHILDLEVRFFGVTILDLRSLAYSLAEKNGIPNNFNRETKMAGLDWVAGFRHRHPEIILRKPEQTSAVRAQAFNEHNMVRSKQRTTNKASWDENTMKRAFQLVQEGRSVKSVAAELNIPRITLHDRLKSGSTAKPALGRKSVFTPDQESIFLDHVKQLANTGITLTDLRRLVFDLAESLTIKHNFNKHTKMAGEDWLAGFRRRNPTVTLRKSSATSLNRILAFNKDEVEERRFISSLHKVGMSCREIARRIKRSFSSVAKFIRHGETYGTRRSTGRPPALTLREKRNILRIASNSCKTARAIADEAGGNRCLAYGCKRRTSINETGMAFHRFPKNEELKEKWVKAVRWENWTLRPYSIICSEHFLEKFVNRTSACGRIELRENAIPTVFPSYPSYLQTQDKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00165287;
- 90% Identity
- iTF_00165287;
- 80% Identity
- iTF_00165287;