Basic Information

Insect: Aricia agestis
Gene Symbol: Clamp
Assembly: GCA_905147365.1
Location: LR990264.1:13218944-13231309[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 8e-06 0.00056 20.6 0.6 1 23 122 144 122 144 0.99

2 7 4.7e-05 0.0033 18.2 2.3 1 23 332 354 332 354 0.97

3 7 2.4e-05 0.0017 19.1 0.1 1 23 360 382 360 382 0.98

4 7 3.6e-06 0.00026 21.7 3.0 1 23 388 410 388 410 0.99

5 7 2e-06 0.00014 22.5 0.4 1 23 416 438 416 438 0.98

6 7 3.4e-06 0.00024 21.8 1.2 1 23 444 466 444 466 0.99

7 7 9.4e-05 0.0066 17.3 0.2 1 23 472 494 472 494 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	8e-06	0.00056	20.6	0.6	1	23	122	144	122	144	0.99
2	7	4.7e-05	0.0033	18.2	2.3	1	23	332	354	332	354	0.97
3	7	2.4e-05	0.0017	19.1	0.1	1	23	360	382	360	382	0.98
4	7	3.6e-06	0.00026	21.7	3.0	1	23	388	410	388	410	0.99
5	7	2e-06	0.00014	22.5	0.4	1	23	416	438	416	438	0.98
6	7	3.4e-06	0.00024	21.8	1.2	1	23	444	466	444	466	0.99
7	7	9.4e-05	0.0066	17.3	0.2	1	23	472	494	472	494	0.96

Sequence Information

Coding Sequence: ATGTTCACGACGAATACTGTGCAAGCCGGCACTGTGCCGACGTTACAGTATCAGGAACACGCAGCTCAGAAATCACAGGGCAAGAATATAGAGAATGTACAGCAGAAGACTACCCAACAGACCCAGCCACAACAGGAATTCCCTACATTCTGCTACACAACAAATGTAAATATGATTGGGAAAATTGGAGCCGGGACTACGAGTGCGGGAGGTGGAGTAGCAGGAAGTGTTAACATTGCACAACTGACCACAAGTGATGACAAGACCTGCTACATAGCACAGCCCTTCTCATACAACTATGCCCTTGTTAATCAAATGCAAATAGCATCTAATGGTATCCAGAACACTATATCGAGTATAAGTTTCAAATGTGACGTTTGTGGGCTTATGTTTGGGCATTTATCACTACTTAACGCACACAAAAGAATTCATGCTCAAGATACAGATAATAACATCGCAGTGGTCGCGACGGGTGTCACATCGGCGAATGATGTTGCGATGCCGCCTCATATACAAATCCTATCATCGGACCACACCGAACAACAACAACAACAGCAGCATCATGTTCAAATTCAAGACACTAAACCAATAATTATAGATAAGGCAGTAAAATGCATAACATGTGGTGGCCCCATACCAAATAATCCCAAAAGAAAAGGTCCAAAACTTATAAGATGCGAAAATTGTATTGCCCAAGACTCAGTAGACCAACGAAATAACCAAATGAATGCAACACAAATATTTGTAACAACAGAAGGCAATGTGAAGTTTGAAGTAGGGGGAGGAGTGAGTGGAGTGAACAATGTCGATCCTTTGGGCACCGCACAGACTAATCAGCAAACACAGCAGACACAACAGAAACCATTGCCTGGTCATCATCCTGTGAAAAAGAGGACTTTGGCATCTGTAACAAAGTGTCAAAATTGCAATGGATCTGGAATTATATTTGTAGGCAATAAGAACAAAAATAATCAACCAAATGCTGAAAAACCATTTCATTGTAACATTTGTGGAGGATCATTTTCAAGATATTCATCACTTTGGTCACACAAAAAACTCCATTCTGGTGAAAAGAATTTTAAATGCGGGATATGTGGTATAGCTTTTGCAAAAGCTGTGTACCTAAAGAATCACTCAAGAATACATACGGGCGAAAAACCATACAGATGTAGTACATGTGGTATGCAGTTTTCACAGTCACCACATTTGAAAAATCACGAGAGAACACATTCTGGCGAAAAACCATATGTGTGTGAAGTTTGTGACAAAGGATTTGCAAGACATGCGACTTTATGGAATCACCGTCGCATTCACACGGGAGAGAAACCTTACAAGTGCGAAACGTGTGGTTCAGCGTTTAGTCAAGCGGCGCATCTTAAAAACCACACAAAGGTTCACTCGGGCGAAAAACCTTTCAAATGTGACATTTGTACAGCAGCATTTGCAGACAGATTTGCCCTGAAGAGACACAGAGGAATCCATGAAAAATATGGTCAAACGGCCCCACTACCTGCAAGAGTGCAACAGAATCAGCAGGAACAACAGAATAACCAGCAAACCGTTGAACAGCAAAACACACAAGCCACCGTCGAAGTGGTGGAACATCGTACTGAACAAACTCTATGA
Protein Sequence: MFTTNTVQAGTVPTLQYQEHAAQKSQGKNIENVQQKTTQQTQPQQEFPTFCYTTNVNMIGKIGAGTTSAGGGVAGSVNIAQLTTSDDKTCYIAQPFSYNYALVNQMQIASNGIQNTISSISFKCDVCGLMFGHLSLLNAHKRIHAQDTDNNIAVVATGVTSANDVAMPPHIQILSSDHTEQQQQQQHHVQIQDTKPIIIDKAVKCITCGGPIPNNPKRKGPKLIRCENCIAQDSVDQRNNQMNATQIFVTTEGNVKFEVGGGVSGVNNVDPLGTAQTNQQTQQTQQKPLPGHHPVKKRTLASVTKCQNCNGSGIIFVGNKNKNNQPNAEKPFHCNICGGSFSRYSSLWSHKKLHSGEKNFKCGICGIAFAKAVYLKNHSRIHTGEKPYRCSTCGMQFSQSPHLKNHERTHSGEKPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCETCGSAFSQAAHLKNHTKVHSGEKPFKCDICTAAFADRFALKRHRGIHEKYGQTAPLPARVQQNQQEQQNNQQTVEQQNTQATVEVVEHRTEQTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01417101;
90% Identity: iTF_00262084;
80% Identity: -