Aage008004.1
Basic Information
- Insect
- Aricia agestis
- Gene Symbol
- -
- Assembly
- GCA_905147365.1
- Location
- LR990269.1:13376527-13391634[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0003 0.021 15.7 3.4 1 23 240 262 240 262 0.98 2 11 0.0002 0.014 16.2 6.6 1 23 268 290 268 290 0.96 3 11 0.0019 0.13 13.1 6.9 1 23 296 318 296 318 0.98 4 11 0.0014 0.1 13.6 1.0 1 23 324 346 324 346 0.96 5 11 7.9e-06 0.00056 20.6 0.9 1 23 352 374 352 374 0.97 6 11 5.2e-06 0.00037 21.2 0.0 1 23 380 402 380 402 0.98 7 11 0.00044 0.031 15.2 0.5 1 23 407 429 407 429 0.96 8 11 0.0013 0.092 13.7 0.2 3 22 437 456 436 459 0.89 9 11 3.1e-05 0.0022 18.8 0.4 1 23 569 591 569 591 0.97 10 11 0.00016 0.011 16.6 1.5 1 23 655 677 655 677 0.96 11 11 3.3e-05 0.0023 18.7 4.3 1 23 687 709 687 709 0.97
Sequence Information
- Coding Sequence
- ATGTGTATGCCTACGCCGAGCAACGTCTCGGGTTTTGGGTATTCTTGGGGGTTCACAAGCACTGCAGATCCCACAAAATGTGAAGTGGACACACCAAATAGTTTGAGCTACACACTAGGAAACACAGTTTCCCCAGAAACCACTTTGACTGTTATGTCACATAAGACACCGCAGGTGCAAGAAAAAGTTGGGGCACTTGCGGTGACAGTGTCTGCGAATTCCGCAGCTCAAGTCACCAGAGTCGTGACCTCCGGTATTCCAATGGCTGGCCGGAAGGCCATGTTCGTACTAAATGAAGCACCAACACAGAACATCCATCATAAGAACCAACATCAAAATCAAACTACTACAATTCAGACTGCTAACCTGGCATCGAAACCGTTTATGACACCGATAGGTCCTATACAACTGACCGCCGAGGAGTGTAACGAAATATTGATGAAGCGGGCACTCCAGGCCCAGGGTATAGCAACACCAGTCATTGATGCGTCGCAGCTAAATCATACATTACTCAACGGAGGCTTGAAAGGCTTAGCAGATGCTACGAATCAGCAGCAAACGGAAACTATACAGACTTCGGTGCCACAACATCATCTTATACACGCTAAACAGGAGCCCGGAACTACTAATAATTCTCCAAAAACGATATATTCGCAGACGGAGATCATGACGAACACGGTGATGGCGGTGTCGCAGCCTGTTGTGAAAGAGAGGCCGTACTCGTGCGACGAGTGTGGCAAGTCCTTCCTGCTGAAACACCATCTCACTACGCATGCAAGGGTGCATACAGGTGAGCGTCCACACGTTTGCGGACACTGCGGTAAGGCGTTTGCCCGGAAACACTGTCTCAACACACACCTGTTACTCCACTCTGCCGACAGACCGTACCGCTGTCACGAGTGTAAGATGGCATTCACACTGAAACATCATCTGGTTACGCATTCTAGGGTGCACAGTCGCGACCGGCCGTTCATCTGCGGGGAGTGCGGGCGGGGATTCCCCCTCAAGCGGCACCTCGTCACGCACAGCAAGTACCACGCCGGTGAGCGGCCGTACGTGTGCAACGAGTGCGGAGAGAGCTTCGCGCAGAAGGAGCACCTAGTAATGCACAGCCGCTTCCACGGTTCCCTATCGCCTTTCGTCTGCCCTGACTGCGGTGTGGCCTTTGCTCGGAAGTTCCAGTTGGTCAACCACGGCCGAGTGCACGGGCGGGTGCCTCATGCCTGCCCCGTCTGCTCTAAAGAGTTCCTTCAGAAGAGGACGCTGGCTGCTCATATGAAAATTCACACTGGAGAAGGTGTCGTAGCGTGCCTCGAATGTGGAGAAGCCTTCAAAAGCAAGGAGGATCTGTTGCAGCACTCTAAAATAACGAGGCACTGTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCACAAATAGTTCAGGTTATTGGTGCTGATGGTCAAATCATTTCGGAGAAATCTACAGGCTATGCGTGTCCGGAATGTGGCTCGTGTTTCAACACAAAAGAGGCGTTATCGTTGCACGTGCGACTCCACGCGGGCGACCGCACCTGCGTGACGGACCTGTGCGCGCTCACAGCGGGCCTGCAGCCGGGACTGGTTGCCGCACACCATGCTACACATAATCAACCCATTCAGATAATCGCGTCCAATCCTAATAGCAATGTAGTACATACACAAGTTATTGCCACGAATCACCACATAACTTCGCCAAGGCCTAAATTACACTTTTGTGTGGACTGTGGAAAGGGATTCGCAGCGAAACACGGACTTTTGGCTCATCAAAGACGGCATCCGGACGGTAGTTGTACGTTACGGACGCACGTGTGCGATCAGTGTGGCAAAGCGTTCTTCCAGAAGAATCATCTCATGCTGCACCAACGGCAGCATATGGATCTGCCGCCGAGGAATGTGACAAACCGGTCGGGTCAGGTGATCGGCAACCAGATAGTGGTGGGCGGGCGGCGGCTGATGGCGGGCGGCTCGCAACTCCAGCTCGTCGACCGCGACGGCAAACCCCTCTCGGCGCAGCTCGCGCACAAGCGGCACCCGGGCGGGGCCGACCTGAAAGACGTCGGAGGCTTGGTGATCCGGTCGCCGGGTGGCACGGAGCTGATCAAATACGAGATATGTCTTCCCTGA
- Protein Sequence
- MCMPTPSNVSGFGYSWGFTSTADPTKCEVDTPNSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGALAVTVSANSAAQVTRVVTSGIPMAGRKAMFVLNEAPTQNIHHKNQHQNQTTTIQTANLASKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGGLKGLADATNQQQTETIQTSVPQHHLIHAKQEPGTTNNSPKTIYSQTEIMTNTVMAVSQPVVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCGHCGKAFARKHCLNTHLLLHSADRPYRCHECKMAFTLKHHLVTHSRVHSRDRPFICGECGRGFPLKRHLVTHSKYHAGERPYVCNECGESFAQKEHLVMHSRFHGSLSPFVCPDCGVAFARKFQLVNHGRVHGRVPHACPVCSKEFLQKRTLAAHMKIHTGEGVVACLECGEAFKSKEDLLQHSKITRHCLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPQIVQVIGADGQIISEKSTGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAGLQPGLVAAHHATHNQPIQIIASNPNSNVVHTQVIATNHHITSPRPKLHFCVDCGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRNVTNRSGQVIGNQIVVGGRRLMAGGSQLQLVDRDGKPLSAQLAHKRHPGGADLKDVGGLVIRSPGGTELIKYEICLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00289043;
- 90% Identity
- iTF_01217699;
- 80% Identity
- -