Aage006811.1
Basic Information
- Insect
- Aricia agestis
- Gene Symbol
- -
- Assembly
- GCA_905147365.1
- Location
- LR990259.1:20023882-20026838[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0027 0.19 12.7 0.6 1 23 14 37 14 37 0.93 2 22 0.64 45 5.2 0.4 2 23 65 87 64 87 0.95 3 22 0.11 7.6 7.6 0.9 3 20 139 156 137 158 0.80 4 22 0.057 4 8.5 1.3 1 23 166 189 166 189 0.92 5 22 3.1e-05 0.0022 18.8 0.1 2 23 195 217 194 217 0.93 6 22 0.0035 0.24 12.3 0.1 2 23 222 244 222 244 0.94 7 22 0.00048 0.034 15.0 0.6 1 23 285 307 285 307 0.98 8 22 0.011 0.79 10.7 0.1 2 23 335 357 334 357 0.95 9 22 0.00022 0.015 16.1 2.9 2 23 378 400 378 400 0.97 10 22 0.0018 0.13 13.2 0.7 1 23 405 428 405 428 0.97 11 22 0.00042 0.03 15.2 0.9 1 23 433 456 433 456 0.96 12 22 0.058 4.1 8.5 0.4 3 23 460 481 459 481 0.95 13 22 0.0075 0.53 11.3 2.7 2 20 491 509 491 511 0.94 14 22 0.1 7.1 7.7 3.7 1 23 568 591 568 591 0.95 15 22 0.91 64 4.7 0.0 2 23 619 641 618 641 0.93 16 22 0.00092 0.065 14.1 0.1 2 23 664 686 663 686 0.95 17 22 0.00024 0.017 16.0 0.8 3 23 693 714 691 714 0.90 18 22 0.0017 0.12 13.3 4.7 1 23 718 740 718 741 0.95 19 22 0.0013 0.089 13.7 1.7 2 23 747 769 746 769 0.94 20 22 2e-05 0.0014 19.4 4.7 1 23 773 796 773 796 0.97 21 22 0.0045 0.32 12.0 1.4 2 23 803 824 802 824 0.96 22 22 3.6e-05 0.0025 18.6 0.4 1 23 830 852 830 852 0.97
Sequence Information
- Coding Sequence
- ATGTCGACGATTATCCCTTTTAAATATTTTACTAACAGATTTAAGTGCTTCTACTGTGGCAAACAATATAACGAAAGTTTGGATCTAAGAGAACATACGGTCGTCGAACATCCAGTTTGTGATGTGAATCATAAATGTATGTCGTTGCGGGGCAGGCTGGAACGCCCTCTCAAAATCGATACATCCGTTATCTCCTGCAAGCTGTGTCACACGTCTATGCAGGACGTGGACTCTTTGATCGACCATTTGATGTCGGAACACGAGGCGCGATACGATAAATCGGTCGATAATAATTTGCAACCCTTCAAATTGATCAAAGATAAATACCCGTGTCCGATTTGTGAAGAAGAGCATCTGTTCTTTGGCAAATTGTTGAGTCACATGTCTCAGGAGCACTCGGAAAATAAACATTTGTGCATGCACTGCGGCAGATCTTTTCGAAGCGCGCCCGGCTTCCGGTTTCACGTGAGAAATTGTCGCGGGACAACGGTCACTTTCAAATGCGACGTGTGTAACTTGGAGTGTTCGTCGAAGAACATTTTGCAACGTCACTTAGGAAATGAACATGACATCAAGAGGATAAAATGTAACGTATGCGGTGAGAAATTCACGGCGAGATATGCTTTAAACAGACACATGATAGACGCGCACGACTCCGGGAACGTGTGCCAGTATTGCGGAAAACAATTCCCCGGCAACTACTTCCTAGTGGACCACGTTGAAAAAATCCATTTGAAAGAGAAAGGTGTTAAATATGAATTCCAAGGCATCTACAGTTCTGAACGGAGAAGGAGAAATTTGCAAATAATCTTCAACAACACGTCCATCATCCCTTTTAAATGGAAAAAACAATACGTTTGCTTTTACTGCGGCGAGGCTTATGCCGAATACGAGGAGTTCAGGAAACACACAAAATCACACGGAATGTGCACAACGAGCGATAATGCGTTGAAAATGATTAACGGGAGGCACATAGAAGTCAAATTAGATACATCGGAGATTTATTGCGAAATTTGCGATGAAACATTTCAAAACTTCAAAGAAATTATTGATCATCTTATAACAGAGCACAAGGTCGAGTACGACAAGGACTTCGACATGCTGTTTCAGGAGTATAGACTCCTCGATAACCGTTGTCGATATTGTGATGAGGAATTTACTGACTTTAGAAGTTTACTACATCATATGAAAACCTTACACACCCCGAAGGATTTTATTTGCGACAGTTGTGGTGCAGGCTTTAAGAAGAAAATTCGTTTATCAAACCATCTCCGTACTTACCACCGCGACGGTGGCTACTCCTGCGACCTGTGCTCAGAAATGTTCGAGTCTCGAATTTGGTTAAAAAAACATCAAAATAACTTCCATCCCAGAGATTGTAAAGCTTGCAACGCTAGTTTTCCGTCTTGTATACTGTTACAAGAACATATCGAGCGAGACCACCCGGATGACGGTGATCTAAAATGTGCATACTGCCATTATTGCCTTAAAAAGTTCCATACGAAGCAGGAGCTCAACCAACACATCGGTAGGTGCAAAATGAAATTGCAAGTGAAAGTCTCGCACGATACAAACCCGAGTGGCACAGGTGGCAACAGAATACAACCGAGGAAGAGGCATAATACTTCGCAAATGAGGAAGAACATACACACCGTTTTAGACTTGTCGACGGCCGTACCGTTTATGTTTACCTCTTCTACATTCTGTTGCTTTTATTGTCCACAAAAGTTTTTTGAATTCGACGACCTCAGAGAACATACGCTAAAGGATCATCCCGTCTGCGAGTCGAAAAGTAAATACTTGAACAGATGTAAAGGCGAACGAGTCACCGTCAAGATAGACATATCGTCGTTGTCCTGCACGGTTTGCGGACTGCCGATGGAAGGTTTCGACAATTTAATAGATCACATTATCAGTGAACACCGATCGCCCTACGATAAGTCCATAGCGAGCTGCTTCGAGCTCTTCAAGGTGGCAAAGGACAATATACCCTGCCCGTACTGCCCGAAAGTCTTTCGATACTTCGGTATTCTCCTCAAACATATCAACTCGGACCACAACGATAACTGTATTATCTGCGATTTCTGCGGCAAGAGTTTCAAGAAGGTGACGAATTTAAAATTGCACATAGGGCACGTCCACACCGGACCTTACGAATGCGAAATTTGCGGATCCAAATTAAAAAATCAGTCGTGCCTAAAACGGCACAAGGCTAAACATCATAACGAGAAGGATATCAAGTGTTCGAAATGCCCGGAGCGATTCGCGAGCCAGTACCACAAACAGAAGCATCTGATCCAGGCCCACGACATCGGGCATAGATGCAGCTACTGCGACAAGATATTCACAAGGAACTCCTTCATGAAAGATCACATACGGCGGACGCACTTGAAGGAGAAGGACGTGGTCTGCTCGGTCTGCAACGACAGGTTCTTCGACAACTACCATTTGAAGTTGCACATGGTGAAACATCAGGGCCAGCGATCGTTTATCTGCGACGTGTGCGGCAAAGCTTTCCTGCGTCGAAGAAATTTGAGCACTCACATGGAGATGCATAAGAAGTATGGTCAAGATAACGCGTTGTAG
- Protein Sequence
- MSTIIPFKYFTNRFKCFYCGKQYNESLDLREHTVVEHPVCDVNHKCMSLRGRLERPLKIDTSVISCKLCHTSMQDVDSLIDHLMSEHEARYDKSVDNNLQPFKLIKDKYPCPICEEEHLFFGKLLSHMSQEHSENKHLCMHCGRSFRSAPGFRFHVRNCRGTTVTFKCDVCNLECSSKNILQRHLGNEHDIKRIKCNVCGEKFTARYALNRHMIDAHDSGNVCQYCGKQFPGNYFLVDHVEKIHLKEKGVKYEFQGIYSSERRRRNLQIIFNNTSIIPFKWKKQYVCFYCGEAYAEYEEFRKHTKSHGMCTTSDNALKMINGRHIEVKLDTSEIYCEICDETFQNFKEIIDHLITEHKVEYDKDFDMLFQEYRLLDNRCRYCDEEFTDFRSLLHHMKTLHTPKDFICDSCGAGFKKKIRLSNHLRTYHRDGGYSCDLCSEMFESRIWLKKHQNNFHPRDCKACNASFPSCILLQEHIERDHPDDGDLKCAYCHYCLKKFHTKQELNQHIGRCKMKLQVKVSHDTNPSGTGGNRIQPRKRHNTSQMRKNIHTVLDLSTAVPFMFTSSTFCCFYCPQKFFEFDDLREHTLKDHPVCESKSKYLNRCKGERVTVKIDISSLSCTVCGLPMEGFDNLIDHIISEHRSPYDKSIASCFELFKVAKDNIPCPYCPKVFRYFGILLKHINSDHNDNCIICDFCGKSFKKVTNLKLHIGHVHTGPYECEICGSKLKNQSCLKRHKAKHHNEKDIKCSKCPERFASQYHKQKHLIQAHDIGHRCSYCDKIFTRNSFMKDHIRRTHLKEKDVVCSVCNDRFFDNYHLKLHMVKHQGQRSFICDVCGKAFLRRRNLSTHMEMHKKYGQDNAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00404028;
- 90% Identity
- iTF_00404028;
- 80% Identity
- -