Aage011270.1
Basic Information
- Insect
- Aricia agestis
- Gene Symbol
- -
- Assembly
- GCA_905147365.1
- Location
- LR990272.1:3145113-3151739[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3.6 2.5e+02 2.8 0.2 2 20 64 82 63 84 0.92 2 16 5.2e-06 0.00037 21.2 2.0 1 23 156 178 156 178 0.99 3 16 1.6e-06 0.00011 22.9 1.7 2 23 249 270 248 270 0.97 4 16 1.7e-06 0.00012 22.8 0.6 2 23 278 300 277 300 0.94 5 16 1.6e-06 0.00011 22.9 1.7 2 23 384 405 383 405 0.97 6 16 2.6e-07 1.9e-05 25.3 1.0 2 23 413 435 412 435 0.94 7 16 0.00066 0.046 14.6 0.2 2 23 519 540 518 540 0.97 8 16 2.6e-07 1.9e-05 25.3 1.0 2 23 548 570 547 570 0.94 9 16 0.0039 0.27 12.2 0.6 5 23 599 617 596 617 0.93 10 16 1.5e-06 0.00011 22.9 0.4 3 23 626 646 624 646 0.95 11 16 2.2 1.5e+02 3.5 0.4 1 23 652 674 652 674 0.92 12 16 0.022 1.6 9.8 0.2 3 23 680 701 679 701 0.93 13 16 4e-05 0.0028 18.4 4.2 1 23 706 728 706 728 0.96 14 16 2.6e-05 0.0018 19.0 0.2 1 23 734 756 734 756 0.97 15 16 0.0003 0.021 15.7 2.7 1 23 762 784 762 784 0.97 16 16 0.0026 0.18 12.7 4.5 2 23 798 819 797 819 0.96
Sequence Information
- Coding Sequence
- ATGGATTTGCTGGCTGCTAAAGACCTGCCGTGTATAAATGACCGCTGTCGAACATGTATGATGGAAATATTTACTGGAATCACTGCAGTTAATATTTTTGAGCGCAACATACAAAACATTAGTGTAGCTGAAATTCTTCACTCGTTTACAGCTCTCACTTTTGATTTAAATGACCAACTTCCAAAAGTTGTATGTCACCTGTGTTATGAGAAGCTCTACAGTTTTTATCAATTTATACTACACATAGAAAATGTTGACACAAAATTCCAAGAAGAACTCAAAGACAAAGACCATTCATCATTCGAAAGTGATGGAATCATGAAAAAGGATTTCAATTTTCAAGAGGTACCTGTAGACCTAAATTCATTACGAGAAAATGAAGGAAGTTTAAGTATGAAGGAAGAAATTTGCGAGGAAGAAAATGGTGGGTTAGAGAATTTTATAAAATTTGAAGTAGTACAAGAATATGTTTGCAATATATGTTACAAATATTTTAGCAACAACGGAAACTATCTAAGACATATTAAGAAACATTCCTCGAGTGATGTAAATAATAGAATAAGCCAAGCAGAACATCCTAACCAAGAATCATTTGACTATAAGACTGGTTCTATTGAAACAAAAGTTAATCCTCTAGAAGACAACATAAATTCAGATAATGAAGCAGATGAGAATGACATTAAACATAGTTTACAAGAAAAACCTGCCCAACACATTACAGAAACCTCAGAAAAGGAGGGTATTGTTTGTGAAATTTGTAACAGATGTTTCCGGAACAAAAACTCCTTGTCAGCACACATGAAAATACATGTTGTTAAAGGTAGGGTATTGTCATGTCCAGCTTGTGGCAAAGTATTTAATACAGCCTACCATTTGAAACGACACCAGAACGAAGTACATAAAGATCATGATGAAACGAGCACAAATTTGGCACATATTAAGAAACATTCCTCGAGTGATGTAAATAAAATAAAACATCCTAACCAGGATGACTCATGTGACTATAAGACTGGTTATATTGAAATAAATGTTAATCCTGTAGAATACAACATAAATTCAGATAATGAAGCAGATGAGAATGACATTAAACATAGTTTACAAGAAAAACCAGCCCAACACATTACAGAAACCTCAGTAAAGGAGGGTATCGTTTGTGAAATTTGTAACAGATGTTTCCGGAACAAAAACTCCTTGTCAGCGCACATGAAAATACATGTTGTTAAAGGTAGGGTATTGTCATGTCCAACTTGTGGCAAAGTATTTAATACAGCCTACCATTTGAAACGACACCAGAACGAAGTACATGAAGATCATGATGAGACGAGCACAAATTTGGCACATATTAAGAAACATTCCTCGAGTGATGTAAATAAAATAAAACATCCTAACCAAGATGACTCATGTGACTATAAGACTGGTTATATTGAAATAAATGTTAATCCTGTAGAAGACAATATAAATTCAGATAATGAAGCAGATAAGAATGACATTAAACATAGTTTACAAGAAAAACCTGCCCAACACATTACAGAAACCTCAGTAAAGGAGGGTATCGTTTGTGAAATTTGTAACAGATATTTCCAGAACAAAAACTCCTTGCCAGCACACATGCGAATACATGTTGTAAAAGGTAGGGTATTGTCATGTCCAACTTGTGGCAAAGTATTTAATACAGCCTACCATTTGAAACGACACCAGAACGAAGTACATAAAGATCACGATGAGACAAGCACATATTTGGCAAAGGAAGATGCAGAACACTTGTCACCTACTTCAATAAAAAATATGTGTATAATTTGTAAACGGAGGTTTAAAAGTCAACAATCAGTGGCCGCACATATGAAAATACATGGTTATAAAGAAAGAGTGTTAGCATGTTCAAAATGTGGCAAAGTATTCCCCAGGGAATATAATTTAAAACGACACGAGTTATCACATGAAGAAAAACGTAAATATAAGTGTGGTTTCTGTAGTGAATCATATTTGACTGAAGAAATACTAGAACAGCATTTGAAACAACACGGTGAAACAAAAATTTGTTCTGTCTGTCAGAAAACATTTGCCGATATGCTTGCACTGAATATGCATGTTTTTAAATTACATAGACGTAAACTATACCTGTGTTCGTACTGCGGCAAGAAGTTTGAGTCTAGTCGACAGTTACATTCACACCAACAAAGGCATATGGGCATTAAAAGATTTGCCTGCACCCTATGTCCAAAAAAATTTATTAGCAAAGGAGAACTAAGAGACCACGTAGCAACTCATACTGGGGAGAGACACTACAAGTGTAAACAGTGTAATGCAGCGTTCAAAAACAGAAGCACACTCGACCAACACACGTTTAGGCATCTACGTATCAAGCCATATCACTGTGATGTATGTCCAAAAACATGTGACCATTGCACGGAGAGTTTCCGCCTCAAGACAGAGCTGACACATCACATCACTCAGCACTATGCCGCTAAACTACAACAAACTGATATGGCCGCAGAGCGAACAGATGTCATACAAACCAATGCTTTGAATGGTTAA
- Protein Sequence
- MDLLAAKDLPCINDRCRTCMMEIFTGITAVNIFERNIQNISVAEILHSFTALTFDLNDQLPKVVCHLCYEKLYSFYQFILHIENVDTKFQEELKDKDHSSFESDGIMKKDFNFQEVPVDLNSLRENEGSLSMKEEICEEENGGLENFIKFEVVQEYVCNICYKYFSNNGNYLRHIKKHSSSDVNNRISQAEHPNQESFDYKTGSIETKVNPLEDNINSDNEADENDIKHSLQEKPAQHITETSEKEGIVCEICNRCFRNKNSLSAHMKIHVVKGRVLSCPACGKVFNTAYHLKRHQNEVHKDHDETSTNLAHIKKHSSSDVNKIKHPNQDDSCDYKTGYIEINVNPVEYNINSDNEADENDIKHSLQEKPAQHITETSVKEGIVCEICNRCFRNKNSLSAHMKIHVVKGRVLSCPTCGKVFNTAYHLKRHQNEVHEDHDETSTNLAHIKKHSSSDVNKIKHPNQDDSCDYKTGYIEINVNPVEDNINSDNEADKNDIKHSLQEKPAQHITETSVKEGIVCEICNRYFQNKNSLPAHMRIHVVKGRVLSCPTCGKVFNTAYHLKRHQNEVHKDHDETSTYLAKEDAEHLSPTSIKNMCIICKRRFKSQQSVAAHMKIHGYKERVLACSKCGKVFPREYNLKRHELSHEEKRKYKCGFCSESYLTEEILEQHLKQHGETKICSVCQKTFADMLALNMHVFKLHRRKLYLCSYCGKKFESSRQLHSHQQRHMGIKRFACTLCPKKFISKGELRDHVATHTGERHYKCKQCNAAFKNRSTLDQHTFRHLRIKPYHCDVCPKTCDHCTESFRLKTELTHHITQHYAAKLQQTDMAAERTDVIQTNALNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -