Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 1.4 1.4e+03 -0.2 0.1 12 20 28 36 18 40 0.70

2 6 0.037 38 4.9 0.2 17 28 69 80 56 89 0.85

3 6 0.064 65 4.1 0.7 19 28 129 138 126 151 0.77

4 6 0.00017 0.17 12.3 2.5 18 40 157 176 141 179 0.88

5 6 0.18 1.8e+02 2.6 0.4 17 29 184 196 177 202 0.77

6 6 2.9e-05 0.03 14.8 2.7 3 43 195 235 193 236 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	1.4	1.4e+03	-0.2	0.1	12	20	28	36	18	40	0.70
2	6	0.037	38	4.9	0.2	17	28	69	80	56	89	0.85
3	6	0.064	65	4.1	0.7	19	28	129	138	126	151	0.77
4	6	0.00017	0.17	12.3	2.5	18	40	157	176	141	179	0.88
5	6	0.18	1.8e+02	2.6	0.4	17	29	184	196	177	202	0.77
6	6	2.9e-05	0.03	14.8	2.7	3	43	195	235	193	236	0.83

Coding Sequence: ATGCGCAGGAACACAGCACGCATCGCAGCTCTCTCGGGGACTCAGTGCAACGAGTATTGGCATCCCCATACCGTCACCCCGAGCTCCCTGACTAAGGCGGAATGTCGTGTCCGTTGCGGCGGTTTCGCCTTGGCCGTCTTCTCCGGTAACCCCGCGGACGACAAAAGATACGCGATATCAACAAACGAAGACGGAACGAAGGATTATACTTGTAGGCTGTGTCAGCGCGTGTATAAGAAACAGTATTTAGCCGTCCAACATTACAAGGGGGTGCACCTAAAGATCCGACCGCGTCTGAGAAGTTGCTACCTCTGCGACGTGTCCGTTCCGGGCTACCTGCGACCGGCGCACATGGAGGAGGCCCACGGCATACCGAAACCCGCGTGCAACGCCTGCGGCAAGAAGTTCTCCTTCCAATTCCAACTGCTGCGCCACCAGAGGACCTTCCACATGGGCGAAATGGACTACGAATGCGACATATGCCATAAGAAATTCGCAAACACCACCGGAATAAAGAGGCACATGGTCCTCCATCAGGCGGAGAAGCCGTACCAGTGTGACTTCTGTGACAAAAGTTTTAAAGCCAAGAAGTATCTGAAGAACCACAGGGCGATACACTTGAACGACAAGAGGTACGAGTGCACGGTGTGCGGGGAGAGATTTGTGCAGACGTCCAGCCTGAAGTACCACATGTCGAGAAAGCACGACAATCGGCAGTAA
Protein Sequence: MRRNTARIAALSGTQCNEYWHPHTVTPSSLTKAECRVRCGGFALAVFSGNPADDKRYAISTNEDGTKDYTCRLCQRVYKKQYLAVQHYKGVHLKIRPRLRSCYLCDVSVPGYLRPAHMEEAHGIPKPACNACGKKFSFQFQLLRHQRTFHMGEMDYECDICHKKFANTTGIKRHMVLHQAEKPYQCDFCDKSFKAKKYLKNHRAIHLNDKRYECTVCGERFVQTSSLKYHMSRKHDNRQ

Sequence clustering based on sequence similarity using MMseqs2