Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.071 72 3.9 0.6 11 27 36 52 30 65 0.79

2 7 0.0057 5.7 7.5 0.4 8 29 73 94 72 107 0.81

3 7 0.00014 0.14 12.6 6.4 12 43 105 133 98 134 0.88

4 7 5.9e-05 0.06 13.8 1.0 19 41 145 164 137 166 0.89

5 7 0.14 1.4e+02 3.0 0.5 17 29 171 183 164 194 0.76

6 7 0.00018 0.18 12.3 2.0 6 40 188 219 186 222 0.84

7 7 0.014 14 6.2 0.1 18 40 228 247 226 250 0.74

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.071	72	3.9	0.6	11	27	36	52	30	65	0.79
2	7	0.0057	5.7	7.5	0.4	8	29	73	94	72	107	0.81
3	7	0.00014	0.14	12.6	6.4	12	43	105	133	98	134	0.88
4	7	5.9e-05	0.06	13.8	1.0	19	41	145	164	137	166	0.89
5	7	0.14	1.4e+02	3.0	0.5	17	29	171	183	164	194	0.76
6	7	0.00018	0.18	12.3	2.0	6	40	188	219	186	222	0.84
7	7	0.014	14	6.2	0.1	18	40	228	247	226	250	0.74

Coding Sequence: ATGTATTGTCGTCAGAACTCAGAGCGTGTGCAAAATTTCATCCTAATAGAAGACCGGGAAAAATTCGCATCAGTGAAGACCGCAGAGCGTCACCGTGTGACGTGTGAGCGCGTCGAACGTAAATTCGTCTGTAACACGTGTGGACGTCGGTTCGCTTTCGAGATCTCTCTTAATAAGCACATATTGCAAAGCCACGCCGGTCAAAGAGTATCAGTGGACTTCATAAGCCGCCAGAAGCGACAGGTCAGCTGTGACTTGTGTGGCAAGACCTTCCCTAGTAAGGAGCAGCTTGTTCGTCACAGCATCGTACACAAAACAACGAAGAAATACGAATGTGATAAGTGCAAGAAGAAGTTTACTAGAAAAGGGAATTTAAAGTCTCACATACACCGAGTGCACGAGTCAGGTCGTAGCAGCAAAGGAAGCGGGCTGTGTCTGTACTGCGGCCGCAGTTTCAACAACTCATCCAATCTCATAGTACACATGCGACGGCATACTGGCGAGAAACCCTACCAGTGTGATTTCTGTGGAAAAGGATTCCCTCGTTCGTCGGACCTTCAGTATCATAGACGTTCCCATACAGGGGAGAAACCGTGCAAATGTGGAATATGTGGAAAAGGTTTCACGGGCAGCAACAAGCTGTCGCGCCACATGCGCGTGCACACCGGCGCGCGACCGTACAAGTGTCCGTACTGCGACAAGGCGTTCTCGCAGAGCAACGACCTCACCGTCCACGTGAGGCGACACACCGGCGACAAGCCGTACGCCTGCGACGTCTGCGGCGACCGCTTCATACAGGGTACAGCGCTCCACAACCACCGTCGTGTGCACGGCCACTACCCCGGCACGCAGTGTGTCACGTTCACCGTGCAGACTGTCACGCAGACTCACTGA
Protein Sequence: MYCRQNSERVQNFILIEDREKFASVKTAERHRVTCERVERKFVCNTCGRRFAFEISLNKHILQSHAGQRVSVDFISRQKRQVSCDLCGKTFPSKEQLVRHSIVHKTTKKYECDKCKKKFTRKGNLKSHIHRVHESGRSSKGSGLCLYCGRSFNNSSNLIVHMRRHTGEKPYQCDFCGKGFPRSSDLQYHRRSHTGEKPCKCGICGKGFTGSNKLSRHMRVHTGARPYKCPYCDKAFSQSNDLTVHVRRHTGDKPYACDVCGDRFIQGTALHNHRRVHGHYPGTQCVTFTVQTVTQTH

Sequence clustering based on sequence similarity using MMseqs2