Agoe106085.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463832.1:6320431-6337487[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0031 0.82 13.0 0.3 1 23 120 142 120 142 0.97 2 21 0.27 70 6.9 0.5 2 23 149 170 148 170 0.96 3 21 0.27 70 6.9 0.5 2 23 177 198 176 198 0.96 4 21 0.27 70 6.9 0.5 2 23 205 226 204 226 0.96 5 21 0.066 17 8.8 0.9 2 23 233 254 232 254 0.96 6 21 0.19 49 7.4 0.6 2 23 307 328 306 328 0.96 7 21 0.27 70 6.9 0.5 2 23 335 356 334 356 0.96 8 21 0.46 1.2e+02 6.2 0.3 2 23 409 430 408 430 0.96 9 21 0.066 17 8.8 0.9 2 23 437 458 436 458 0.96 10 21 0.27 70 6.9 0.5 2 23 465 486 464 486 0.96 11 21 0.27 70 6.9 0.5 2 23 493 514 492 514 0.96 12 21 3.4 8.8e+02 3.5 0.2 2 21 569 588 568 589 0.89 13 21 0.27 70 6.9 0.5 2 23 597 618 596 618 0.96 14 21 0.27 70 6.9 0.5 2 23 625 646 624 646 0.96 15 21 0.27 70 6.9 0.5 2 23 653 674 652 674 0.96 16 21 0.27 70 6.9 0.5 2 23 681 702 680 702 0.96 17 21 0.27 70 6.9 0.5 2 23 757 778 756 778 0.96 18 21 0.27 70 6.9 0.5 2 23 785 806 784 806 0.96 19 21 0.27 70 6.9 0.5 2 23 861 882 860 882 0.96 20 21 0.27 70 6.9 0.5 2 23 889 910 888 910 0.96 21 21 0.27 70 6.9 0.5 2 23 917 938 916 938 0.96
Sequence Information
- Coding Sequence
- ATGTCTAATTTATCCTTTTACTACCAGAATGTAAGAGGGCTGCGCACGAAATCTCACGACTTTCATTCTAACGTATTAGATTGTAATTACCATGTTGTCTGTTTGTCGGAGACTTGGCTCAACGATGGTTTTCATAGTAGGGAGTATTTTGATGAACGTTTTACAGTACATAGATGCGACAGGGACGAGGCGGCTAGCGGAGCGGAGTGTGGTGGCGGAGTGCTGATTGCGACCCACCGGGAGTTGGCGGCGGAGAGGCGCGCATGGCCCGTGCCGGCCCGCGCCCGCTCCCAGTGCCTGTGGATTGCGATTCCTATTCGGGCTCGAATATCTAATATCCACAAGGGCGAGAAGGAATACGCGTGTCCCGAGTGCAACAAGATGTTCCTGTTCAAGAAGGCTATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGTGCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGtgCAACAAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGGTGACGTCACACACGCGcacacatacatatacacacacacatacatacacacagtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCgagtgCAACGAGATGTTCCTGTTCAAGAAGGAGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGGTGACGTCCCACACGCGcacacatacatatacacacacacatacatacacacagtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGtgCAACGAGATCTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGtgCAACAAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGGTGACGTCACACACGCGCGcacatacatatacacacacacacacacatacatacacacagtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTTACCTGGCACCGCAATACCTCTACTGCCGCGAGtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACTGCAACACCTCTACTGCCGCGAGtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGGTGACgtcacacacgcacacatacatatacacacacacatacatacatacatacacacagtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGGTGACGTCACACACGCGcacatacatatacacacacacacacacacacacatacacacagtgcAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGtgCAACGAGATGTTCCTGTTCAAGAAGGCGATGCAAGTCCACCTGATCACTCACCTGGCACCGCAACACCTCTACTGCCGCGAGGTGACGTCACACAcgcatacatacacacacacactcgcCCACGCACACAAGCCTTTTGGGAGAACTAAAATAGATACGATAAAAGTTTCGAAGGCACTAAAGTAA
- Protein Sequence
- MSNLSFYYQNVRGLRTKSHDFHSNVLDCNYHVVCLSETWLNDGFHSREYFDERFTVHRCDRDEAASGAECGGGVLIATHRELAAERRAWPVPARARSQCLWIAIPIRARISNIHKGEKEYACPECNKMFLFKKAMQVHLITHLAPQHLYCRECNEMFLFKKAMQVHLITHLAPQHLYCRECNEMFLFKKAMQVHLITHLAPQHLYCRECNEMFLFKKAMQVHLITHLAPQHLYCRECNKMFLFKKAMQVHLITHLAPQHLYCREVTSHTRTHTYTHTHTYTQCNEMFLFKKAMQVHLITHLAPQHLYCRECNEMFLFKKEMQVHLITHLAPQHLYCRECNEMFLFKKAMQVHLITHLAPQHLYCREVTSHTRTHTYTHTHTYTQCNEMFLFKKAMQVHLITHLAPQHLYCRECNEIFLFKKAMQVHLITHLAPQHLYCRECNKMFLFKKAMQVHLITHLAPQHLYCRECNEMFLFKKAMQVHLITHLAPQHLYCRECNEMFLFKKAMQVHLITHLAPQHLYCREVTSHTRAHTYTHTHTHTYTQCNEMFLFKKAMQVHLITHLAPQHLYCRECNEMFLFKKAMQVHLITYLAPQYLYCRECNEMFLFKKAMQVHLITHLALQHLYCRECNEMFLFKKAMQVHLITHLAPQHLYCRECNEMFLFKKAMQVHLITHLAPQHLYCRECNEMFLFKKAMQVHLITHLAPQHLYCREVTSHTHTYIYTHTYIHTYTQCNEMFLFKKAMQVHLITHLAPQHLYCRECNEMFLFKKAMQVHLITHLAPQHLYCRECNEMFLFKKAMQVHLITHLAPQHLYCREVTSHTRTYIYTHTHTHTYTQCNEMFLFKKAMQVHLITHLAPQHLYCRECNEMFLFKKAMQVHLITHLAPQHLYCRECNEMFLFKKAMQVHLITHLAPQHLYCRECNEMFLFKKAMQVHLITHLAPQHLYCREVTSHTHTYTHTLAHAHKPFGRTKIDTIKVSKALK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -