Agoe106021.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463832.1:5677493-5692880[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.1 3e+02 4.9 4.8 2 23 419 440 418 441 0.92 2 14 0.13 35 7.9 4.7 1 23 445 467 445 471 0.97 3 14 2.1 5.4e+02 4.1 6.7 1 23 476 498 476 503 0.88 4 14 2.1 5.4e+02 4.1 6.7 1 23 507 529 507 534 0.88 5 14 1.1 3e+02 4.9 4.8 2 23 556 577 555 578 0.92 6 14 2.1 5.4e+02 4.1 6.7 1 23 582 604 582 609 0.88 7 14 0.0041 1.1 12.6 3.1 1 23 613 636 613 636 0.97 8 14 0.00021 0.055 16.7 3.8 1 23 639 662 639 662 0.97 9 14 0.00014 0.036 17.3 0.3 2 23 666 688 665 688 0.96 10 14 0.066 17 8.8 0.4 3 22 698 717 697 721 0.92 11 14 0.0022 0.57 13.5 3.0 1 23 728 751 728 751 0.97 12 14 3.3e-05 0.0087 19.2 2.8 1 23 757 780 757 780 0.98 13 14 2.1e-05 0.0054 19.9 0.6 2 23 790 811 789 811 0.97 14 14 0.0016 0.41 13.9 0.2 1 23 817 840 817 840 0.97
Sequence Information
- Coding Sequence
- ATGCAGACACAGTACAGTGTTTCTCTGGACTCATTGAAGTGCCGGACGTGTCTGAGTGTTGGTCGCAGGCTGCGTCCGTTGGCAGTATACTCTGATGTGTTCCGTTGTATTATGGGGTCAAGTGATATGCTGTACGCAACACAGATGCTTATTTGCTGGGAGTGTGAAGCTGTGTTGCGAAGTGTCATGCGGTTCCAGAACAAAGTGTACACGGCCAACAGTGTGCTCGGCCAGACACACCAAGGGTCCTTATCAAGTCTGGCCATTAACGTGATAGCGCCGACATCTAGCGACGAAGAATCAAATACAAAACATCTAAAACAAGATGGAGAAATCATCCAAAAACCTACGGAGTTCACAGATGACGAATATGATTATGCGGATGATCCATTCCATAACTCCGATGACAAACCCTCAGTTAGAAAAATAAAGATGGAAAACGATCCATATACTGATTTTATAAACGACGAAACAGTCTTTGTGAAGGTCGAAAGATTAGAATTCTTAAAGCCAaaagcaaaaagaaaaaaagagagTGTTGAACCAAAGGCAAAAAGAAAAAACGATATAGACGAGAGTGAAGTATCTGATGTTAAAACTAAAAGTAATATAATACGTTTGCCAAAAAAGACACTTGAAAAACCGAGATACAATTTCGTGAAAACAACTGGTAATACTAAAGAAGAAGATATGTACACGAGAGTTGCCATTAACGAGACAGAGTTAGCGGAGTGTCGCGCGAGAGAGAGGGAGAGTGAGTTCTTCAAGAAGAGAAAGAAGAAGTGCGAAGAATGTCTCCTTGGATTCCGGAGCGGCCGGCAACTACACGTGCGATGTTTGTACAATGCGATTTGCCTCGAGAGCGCTCCTAGCTCCTCACAGAGAGAGTCACCGGCACAAGCTAGTGTGCCGCGCTTGCAGCTACGAGAGCTACACGAGCAGTCATATGTCGCGGCACTACAGGAAGCACCACGACACCACCTACCAGTGCCGCAAGTGCCGACTGCAGTTCGCGTGAgtaagaaagagagagagagagagcctAGCTCCTCACAGGGAGAGTCACCGGCACAAGCTAGTGTGCCGCGCTTGCAGCTACGAGAGCTACACGAGCAGTCATATGTCGCGGCACTACAGGAAGCACCACGACACCACCTACCAGTGCCGCAAGTGCCGACTGCAGTTCGCGTGAgtaagaaagagagagagagagagagcctAGCTCCTCACAGAGAGAGTCACCGGCACAAGCTAGTGTGCCGCGCTTGCAGCTACGAGAGCTACACGAGCAGTCATATGTCGCGGCACTACAGGAAGCACCACGACACCACCTACCAGTGCCGCAAGTGCCGACTGCAGTTCGCCTACGAGAGCAACACGAGCAGTCATATGTCGCGGCACTACAGGAAGCACCACGACACCACCTACCAGTGCCGCAAGTGCCGACTGCAGTTCGCCTACGAGAGCTACACGAGCAGTCATATGTCGCGGCACTACAGGAAGCACCACGACACCACCTACCAGTGCCGCAAGTGCCGACTGCAGTTCGCCTACGAGAGCTACACGAGCAGTCATATGTCGCGGCACTACAGGAAGCACCACGACACCACCTACCAGTGCCGCAAGTGCCGACTGCAGTTCGCAGAGAGTCGCCGGCACAAGCTAGTGTGCCGCGCTTGCAGCTACGAGAGCTACACGAGCAGTCATATGTCGCGGCACTACAGGAAGCACCACGACACCACCTACCAGTGCCGCAAGTGCCGACTGCAGTTCGCCTACGAGAGCTACACGAGCAGTCATATGTCGCGGCACTACAGGAAGCACCACGACACCACCTACCAGTGCCGCAAGTGCCGACTGCAGTTCGCCCGTCGCAGCGAGTTCACGGAACACTACAAGCAGATGCACGAGAGGTTCATATGCGATCACTGCGGCACTCAGTTCAAGATGCGCTACATGATGATCAAACACATGAGGAAGCGCCACCTGGCGATCAAGTGCGGCATCTGCGGCACCCGCTACTCGAGCCGCTACGGGCTGAAGGTGCACCGGCTGCGACTGCACTCgagcgcgggcgcgggcgccgcCTACTGCGTCGAGTGCGACATGCAGTTCCCGAACGAGTTTAAGTACAAGAATCATCTGAAGACAGGCGCCAGACACAAGCCGCGGATAAAAAGGTTCCCGTGCGAACATTGCGACAAGATGTTCTGGAAGCAATGCGATCTGCGCGCGCATCGCAACATGGTGCACCTGAAGATCTGCCGGTTCCGCTGCGATGACTGCGGCCAGAGGTTCGGCCGCAAGTGCAACTTGCTCGAACACCGCCGCGTGCGACACGAGCGTCGCTCGCCGAGCCGGGACAAGGTGTGCCAGATCTGCGCGCGCGGGTTCACGACGAAACAAAGCCTCAATCGACACATGATGATACATACAGGCGAGCGTCCGTTCGTGTGCGCGCTCTGCTCGGCGAGCTTCAACCAGCGCTCGGCGATGAACACGCACGTGAGGAACGTGCACAAACTGCAGCACCGCgccgcgccgccaccgccgccgccgccgcacacGTAG
- Protein Sequence
- MQTQYSVSLDSLKCRTCLSVGRRLRPLAVYSDVFRCIMGSSDMLYATQMLICWECEAVLRSVMRFQNKVYTANSVLGQTHQGSLSSLAINVIAPTSSDEESNTKHLKQDGEIIQKPTEFTDDEYDYADDPFHNSDDKPSVRKIKMENDPYTDFINDETVFVKVERLEFLKPKAKRKKESVEPKAKRKNDIDESEVSDVKTKSNIIRLPKKTLEKPRYNFVKTTGNTKEEDMYTRVAINETELAECRARERESEFFKKRKKKCEECLLGFRSGRQLHVRCLYNAICLESAPSSSQRESPAQASVPRLQLRELHEQSYVAALQEAPRHHLPVPQVPTAVRVSKKEREREPSSSQGESPAQASVPRLQLRELHEQSYVAALQEAPRHHLPVPQVPTAVRVSKKERERESLAPHRESHRHKLVCRACSYESYTSSHMSRHYRKHHDTTYQCRKCRLQFAYESNTSSHMSRHYRKHHDTTYQCRKCRLQFAYESYTSSHMSRHYRKHHDTTYQCRKCRLQFAYESYTSSHMSRHYRKHHDTTYQCRKCRLQFAESRRHKLVCRACSYESYTSSHMSRHYRKHHDTTYQCRKCRLQFAYESYTSSHMSRHYRKHHDTTYQCRKCRLQFARRSEFTEHYKQMHERFICDHCGTQFKMRYMMIKHMRKRHLAIKCGICGTRYSSRYGLKVHRLRLHSSAGAGAAYCVECDMQFPNEFKYKNHLKTGARHKPRIKRFPCEHCDKMFWKQCDLRAHRNMVHLKICRFRCDDCGQRFGRKCNLLEHRRVRHERRSPSRDKVCQICARGFTTKQSLNRHMMIHTGERPFVCALCSASFNQRSAMNTHVRNVHKLQHRAAPPPPPPPHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -