Basic Information

Insect: Argyresthia goedartella
Gene Symbol: RREB1
Assembly: GCA_949825045.1
Location: OX463830.1:10880148-10885467[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.018 4.7 10.6 0.2 3 23 77 98 75 98 0.96

2 12 7.9 2.1e+03 2.3 1.1 1 21 121 141 121 142 0.89

3 12 0.03 8 9.9 0.1 1 23 269 291 269 291 0.97

4 12 0.0023 0.61 13.4 0.5 1 23 300 322 300 322 0.99

5 12 0.0026 0.69 13.2 2.0 1 23 328 351 328 351 0.97

6 12 0.0041 1.1 12.6 1.6 1 23 702 725 702 725 0.96

7 12 0.00013 0.034 17.3 0.3 2 23 925 946 924 946 0.97

8 12 0.035 9.1 9.7 5.3 1 23 952 975 952 975 0.97

9 12 0.12 32 8.0 1.3 1 23 1006 1030 1006 1030 0.91

10 12 0.027 7.1 10.0 0.7 1 23 1055 1078 1055 1078 0.98

11 12 0.0025 0.66 13.3 0.2 2 23 1118 1139 1117 1139 0.96

12 12 0.039 10 9.6 5.3 1 23 1145 1167 1145 1167 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.018	4.7	10.6	0.2	3	23	77	98	75	98	0.96
2	12	7.9	2.1e+03	2.3	1.1	1	21	121	141	121	142	0.89
3	12	0.03	8	9.9	0.1	1	23	269	291	269	291	0.97
4	12	0.0023	0.61	13.4	0.5	1	23	300	322	300	322	0.99
5	12	0.0026	0.69	13.2	2.0	1	23	328	351	328	351	0.97
6	12	0.0041	1.1	12.6	1.6	1	23	702	725	702	725	0.96
7	12	0.00013	0.034	17.3	0.3	2	23	925	946	924	946	0.97
8	12	0.035	9.1	9.7	5.3	1	23	952	975	952	975	0.97
9	12	0.12	32	8.0	1.3	1	23	1006	1030	1006	1030	0.91
10	12	0.027	7.1	10.0	0.7	1	23	1055	1078	1055	1078	0.98
11	12	0.0025	0.66	13.3	0.2	2	23	1118	1139	1117	1139	0.96
12	12	0.039	10	9.6	5.3	1	23	1145	1167	1145	1167	0.97

Sequence Information

Coding Sequence: ATGTTTCGCTGTTTCGTTGTTACAGATATCAAAACAGAAAGCGTCGCGGCGAAGGTGGAGATGGATTTGAAGGTGAACAGTCAACGGACAAGGACCATGAGTATTGATAGTGACAACCGGTCTGACAGGAGTGAGGAGGAGGACAACAGGCGCGCGCGTAAGCGACCCGCGTCACCACCGCTGTCTCCGAGACCTCTCAGTGCCATCAAGAGACTAGCGAAGCTCGCGTGCCCACACTGCCGACAAGCGTTCGACTCAACAGACGCTCTGGACCTACATCGACTCACAGCCCACGGCGACGACTCCCGCTACGTCGACTTCAACCGAAAGTTCATCCCAAATGTGTCCATCACAGAGAGATTTAGATGCAACAGCTGCACCCGTGACTTCCCTTGCAGCGAAGCTTTGGACGTCCATAGGAAGTCTTGCATTTCACCGTCGAGGGTCAGAACTCCCGAGAGAGACCGAAGGGACGACTTCTTCGCGAAGCTGAATCTTACGAACAGGTCTTTTGGTATGCCTGGTACGCTGACACCGCCCATGGACCGATTCACGCCGAAATTCGACGAACAGTTCACTGAGAACGGTATTAGGCACATGGACGCCACCAGAGACTTCGCTGATATCCAATCGATCCTCAACGTCACTTCCGCCGGTAGTCTACTTGAGCGCTTGACAGGAACTAGGGTTCCTTTAGATAGCTCAGTACTGACTCCACCTGATACCATCGCGAAAGACCGCGACCAAGAAGAGACCCAGGATAGTTTCACAGCAGAGTTCAGACGGATGAAACTGCGCGGGGAGTTCCCCTGTCGTCTCTGTCCCGCTAAGTTTCCAAACCTCCGCGCCCTGAAGGGACACAACAGAGTACATCTCACAGGAACCGGCCCCGGACCTTACCGGTGCAACATGTGCCCTCACGCGTCATTGGACAAAGCGGCTCTCGTGAGACACATGAGGACTCACAATGGAGACAGACCGTATGAATGCGCCGTCTGCTCATACGCTTTCACCACCAAAGCGAACTGCGAAAGGCATCTGAGAAATCGTCACGCGAAGCTTACCAGAGAAGATGTCAAACGCTCTATCATATACCACCCCTCTGAGGATCCCAACAACGATGAAGTCAACTCAAAGATAACCCGCGAGGACGTCAAACGATCTCTACCTTTCCACACCCCAGAAATATCTGAAAGGAGACATGAATCCGGCCGAGACACGCCTGTCACTCATTTCACACCTAACTTCATTCCCGAAAGACACCCAGTGACAGCGCTGACGCCGACACCGCTACCAGACGCCCCTACACTGACTCCGAGGGACTCTGATCTCAATATCCCCAGAATCAAAGTGAAGGGCATTGGCCAGCTGACTCAAATACCGGAGTTTCGGACACCTGAGTTATCATTCAAGTCTAATGATGTGGAATTAGACACTTATAACGATGATGCACCAGTCGACCTtagtaacaacaacaacagcgaTAGCAACCACTGCGACGCTCTCGATCTTAGTAAGAAGAAGCGAGATGAAGACCAGAAGCCGCCGCCGCGACCAACCTTCGAACCAGATGCGGCCagcgtcgccgccgccgccttcGAGAAGACCAGATTTCTCGCGACACTGGCACAGCAACGCCTCTTTGAGAACCAACTACCGAAGCTAGACCCTTCGTATTATGCCACCCAACTCTCCCAGCTCTACGCCAGCACGATGTCCAGCATCCCAGGCCTGCCTTTCCCCCCTTCCTTTCCCCTCAACCCTTACTTTCTACAAACATCTTTTTTTCCCCACCCAACCGACTCTCAAGAAATGGCAGAAATGAAGCAGCGCGTACAGAAGGAGATCATTCGCGGATTGAACATGTCTGGTGGCGGGCTCATCACGCCTGAGCCGAAAATTACACAACCAAAGCTGGAGCCTGAGGAGGAAGACCAGAAACCAGTCTCACGAGACGCATCTCCCGTGCCGCCTCCACGATCCGAATCACCGCCTCCGATCCCAAACACTCTGATCCCCCAAACTGATTCTGTGAAGATGGTGATCAAAAACGGTGTGCTAATGCCGAAACAGAAACAGAGGCGTTATCGCACTGAACGGCCGTTTTCGTGCTCGCAATGCTCAGCCCGGTTTACGCTGAGATCCAACATGGAACGGCATGTCAAGCAGCAGCACCCGCAGCACTGGAACGTCAGGAGACCCGCGCCCAGAGCGCCGCCGCCCTATCCCAGTGCAGACGCTTCGATGGCAGACCGAGTCAAATACGCTCTATTAGCTCGACACCTGGAGCGTCCGCTACAGTCAGACCACTCGCCTGTCCGACGAGACTCTGACGAAGTTGCTGACAACGAGGAAGATGAAGACGACACCCTGGTTATCGACGAGGAAAACCCAGAGATTGAAACCAGATCACAAGAAAGGTCTGAAGAACTCTCGGCCGCCCATCGCGCTGCAGCCGAAATCCTCATGGCGACTCGTAACCAAGAAATGCACAAGGACTTTGATCTCAAAATAGCCGGGAACCTCATCAGCAAACCGGCAGTCCCGGAGAAGACTGAGACGGGAACTGATCCTATCCCTTTGGATGCTGAGGAACCGCTGCCAATTCCTGTCGTGCCGACTCCCAGTGATGAGGAGGAGGATGAGGAGGGCCTGGTGGCATCAACGAGTGAAGGGAACATATCTGGAAGCGATGAAAATAAATCGGAATCCGACACGGGGGCTCTACCACCAAAGAAGAAGTCAGCATACAGCCTCGCCCCCAACCGGGTGTCCTGTCCCTATTGCGACCGCAAGTTCCCCTGGTCCTCATCCCTTCGTCGCCATGTCCTCACCCACACAGGCCAGAAGCCCTTCAAGTGCCCTCACTGCCCTCTCCTCTTCACCACAAAGTCTAACTGCGACCGCCACCTCCTCAGAAAACACGGAGGCTCAGCCCGCGCCATTCTCGCTGAACCCATCCCAGAAACCATTCCACCAGCAATCAATGACTCCAGAAACGTCCCAGACAGACCTTTCAAATGTGCATCCTGCCCTACCAGCACATTTTCTTCCCTCGAAACCCTCAAAAAGCACATGTCATCCCGTCACGGCATGGGCGACTCCCAACCCGAATCGCCAAACCCTGAAGTTGAAGAGGAGGTGTCTGATGGTGTACTGGCTTTCAAGTGCCATCTTTGTGAAGCGTCATACGGAGACCGGGGGAGCGCCTTGAGGCATCTTTTGACGACGCATTCGGCAGAATATGAGCAGCTGGTTAGCAAGGGAGCCCTGGATGCTGCCAGCGATCGCAGTGAAAGCGCTGATGATGACGACCGGGGGAAGTTCCCTGACCATGCTAATAGGAAGGTGGTTTGCGCATTCTGCGTCCGCCGCTTCTGGTCCGCGGAGGACCTGCGCCGGCACATGCGCACGCACTCGGGCGAGCGGCCCTTTGCCTGCGACCTGTGCCGGCGCCGGTTCACCCTGAAGCACAGCATGCTGAGGCACAGGAAGAAGCATCGAGACGAGACCGACGATGAGGTGACGCCGCCTGGGACGCCGATTGAGAACATTTCTAATGGCTACCGTTACGACGATGGCAGCGACGTCCCCAGCAACGTGAACAACAACAACTCGCCGCCTGCCGCGCCATACgagaaaaaaatcaaaatcgcCATGGCCTCCCGAAAATACTCTTCCGAAGCCGACAATGACACCGAAAACGGCAGCGACTTAATTGGTAAACTGTTGGGAATCCCAGACAAGACTATAATAAACAAACTACTATGCTCAGCATCGCCTGATGAAGCAGCGAAGTTCCTTGGAGTCAATAAATGA
Protein Sequence: MFRCFVVTDIKTESVAAKVEMDLKVNSQRTRTMSIDSDNRSDRSEEEDNRRARKRPASPPLSPRPLSAIKRLAKLACPHCRQAFDSTDALDLHRLTAHGDDSRYVDFNRKFIPNVSITERFRCNSCTRDFPCSEALDVHRKSCISPSRVRTPERDRRDDFFAKLNLTNRSFGMPGTLTPPMDRFTPKFDEQFTENGIRHMDATRDFADIQSILNVTSAGSLLERLTGTRVPLDSSVLTPPDTIAKDRDQEETQDSFTAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLTGTGPGPYRCNMCPHASLDKAALVRHMRTHNGDRPYECAVCSYAFTTKANCERHLRNRHAKLTREDVKRSIIYHPSEDPNNDEVNSKITREDVKRSLPFHTPEISERRHESGRDTPVTHFTPNFIPERHPVTALTPTPLPDAPTLTPRDSDLNIPRIKVKGIGQLTQIPEFRTPELSFKSNDVELDTYNDDAPVDLSNNNNSDSNHCDALDLSKKKRDEDQKPPPRPTFEPDAASVAAAAFEKTRFLATLAQQRLFENQLPKLDPSYYATQLSQLYASTMSSIPGLPFPPSFPLNPYFLQTSFFPHPTDSQEMAEMKQRVQKEIIRGLNMSGGGLITPEPKITQPKLEPEEEDQKPVSRDASPVPPPRSESPPPIPNTLIPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWNVRRPAPRAPPPYPSADASMADRVKYALLARHLERPLQSDHSPVRRDSDEVADNEEDEDDTLVIDEENPEIETRSQERSEELSAAHRAAAEILMATRNQEMHKDFDLKIAGNLISKPAVPEKTETGTDPIPLDAEEPLPIPVVPTPSDEEEDEEGLVASTSEGNISGSDENKSESDTGALPPKKKSAYSLAPNRVSCPYCDRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPETIPPAINDSRNVPDRPFKCASCPTSTFSSLETLKKHMSSRHGMGDSQPESPNPEVEEEVSDGVLAFKCHLCEASYGDRGSALRHLLTTHSAEYEQLVSKGALDAASDRSESADDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDETDDEVTPPGTPIENISNGYRYDDGSDVPSNVNNNNSPPAAPYEKKIKIAMASRKYSSEADNDTENGSDLIGKLLGIPDKTIINKLLCSASPDEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00161914;
90% Identity: iTF_00161914;
80% Identity: -