Agoe117816.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463836.1:2380787-2389431[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.22 56 7.2 4.7 1 23 77 100 77 100 0.95 2 10 8.9e-05 0.023 17.9 3.3 3 23 109 130 107 130 0.94 3 10 0.6 1.6e+02 5.8 2.6 3 23 139 160 138 160 0.97 4 10 2.9e-06 0.00076 22.5 0.5 2 23 168 189 167 189 0.97 5 10 0.00087 0.23 14.7 6.3 1 23 196 219 196 219 0.97 6 10 0.0034 0.9 12.9 5.6 1 23 227 250 227 250 0.93 7 10 0.00065 0.17 15.2 0.3 2 23 258 279 257 279 0.97 8 10 0.035 9.2 9.7 3.4 2 23 287 309 286 309 0.95 9 10 5.6e-05 0.015 18.5 3.0 1 23 316 339 316 339 0.92 10 10 0.00017 0.044 17.0 5.2 1 23 349 371 349 371 0.98
Sequence Information
- Coding Sequence
- ATGATGCAGCAGCCCCACCAGTCGTCACAGCCGCCACCAGAACCGCTCCCAACAATGTCAACTTCCGAAACGCAACCGGTGAAAACCGAAAACGATACACCAACACCGCCggacgataagaaatttatcaGCATATCCAACCCAGATTTGACTGAGGAACAGCGGGAGATGTACGAGTCCGTCCTAACGACGTGGAAGCCTAGTATGTTCCCAAAACAGCCCCGGCAATACATCTGCCAGAAATGCTGCAAGGAATTCAAAAACTACCAAAATCTGTACTTGCACACCACTAGAGTGCACTCTACAGAAGATTCCGCCGTCATATGCAATATGTGCGACAAGTCGTTCAAAAACAAACACTATTTATACATGCACCGTATGAACAAACACTATTCGGATTCCGACCGGAAATTCTGCCAGTTTTGTCTGCAAGAGTTTCGAACGGGTCGCGCTCTTCACATGCACATAAAGAAGATGCACCCACAGACATTACCCGAACTGAAATGCCCAGTGTGCGAGAAAGAGTTCAAAGTGCCATATAAGTTGAAGTACCACATGAATACGCACAATCCGAATCGAGAACGTTATTCGTGTCATATATGCCACAAATTCTACAAGTCTATGTTGAACTTAAATCAGCATTTAAAGTCGCAGCATTCGGCGGTGCCGAGGCAAAGACATCCGTGCGTGTTTTGCCCGCAGACATTTAAAAGCAAGCATCATATGAAACGCCATGTTTTGAACGTGCACCCTCCATTGGAATCAAAGGTGTCTTGTCCGGAATGTATGAAGGAGTTTAAGAATGATCAGTACTTGAAAGAGCATATGCAGATTCATACTGGCCTAGAAAAGAAGGTAACATGCGACCAATGCAACAAAATGTTCCACTCTACCCTTCGTCTGAAAAAGCACAAGAAAATCGTCCACCCAGTCGGGAAACCGAAGTACCGGTGTGAAAAATGTGATAAGGAGTTCGCACATGAGCATTACCTGAGGAGGCATACTGACGCTGTGCACGTGGAGACCAACGAGAGCGAATGGGAACATCAATGTGATCAATGCAATAAGAAGTTCAAGGTGCTGAAATATTTGAAGAATCATCAGCTAAGACACGAGCAGCAGCAACTAAAGCGCGTCACCACAATAGTGAAGACAGTGATGGACGACGGACCACGGCCCAAGCGAGGACGTCCGCGGCGGCGGCGACAGGAGATCGAGTTCATCAAGTGCGAGCCCGTCACCAGCTCCGAGTCCGGCAGCGggaccgagaccgagaccgagaccgacgaggaataa
- Protein Sequence
- MMQQPHQSSQPPPEPLPTMSTSETQPVKTENDTPTPPDDKKFISISNPDLTEEQREMYESVLTTWKPSMFPKQPRQYICQKCCKEFKNYQNLYLHTTRVHSTEDSAVICNMCDKSFKNKHYLYMHRMNKHYSDSDRKFCQFCLQEFRTGRALHMHIKKMHPQTLPELKCPVCEKEFKVPYKLKYHMNTHNPNRERYSCHICHKFYKSMLNLNQHLKSQHSAVPRQRHPCVFCPQTFKSKHHMKRHVLNVHPPLESKVSCPECMKEFKNDQYLKEHMQIHTGLEKKVTCDQCNKMFHSTLRLKKHKKIVHPVGKPKYRCEKCDKEFAHEHYLRRHTDAVHVETNESEWEHQCDQCNKKFKVLKYLKNHQLRHEQQQLKRVTTIVKTVMDDGPRPKRGRPRRRRQEIEFIKCEPVTSSESGSGTETETETDEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00161900;
- 90% Identity
- -
- 80% Identity
- -