Basic Information

Insect: Argyresthia goedartella
Gene Symbol: -
Assembly: GCA_949825045.1
Location: OX463811.1:5726680-5738658[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.28 74 6.9 0.1 2 23 212 234 211 234 0.94

2 10 0.14 38 7.8 0.7 2 23 258 280 257 280 0.92

3 10 0.13 34 7.9 1.7 3 23 304 324 302 324 0.96

4 10 0.0015 0.38 14.0 0.2 1 23 328 350 328 350 0.99

5 10 0.086 23 8.5 6.2 1 20 355 374 355 377 0.91

6 10 0.0071 1.9 11.9 3.7 2 23 384 406 383 406 0.96

7 10 9.6e-06 0.0025 20.9 0.9 1 23 413 436 413 436 0.98

8 10 0.0098 2.6 11.4 1.4 1 23 442 464 442 464 0.96

9 10 5.9e-07 0.00015 24.7 0.8 1 23 470 492 470 492 0.99

10 10 3.5e-05 0.0092 19.1 2.0 1 23 498 521 498 521 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.28	74	6.9	0.1	2	23	212	234	211	234	0.94
2	10	0.14	38	7.8	0.7	2	23	258	280	257	280	0.92
3	10	0.13	34	7.9	1.7	3	23	304	324	302	324	0.96
4	10	0.0015	0.38	14.0	0.2	1	23	328	350	328	350	0.99
5	10	0.086	23	8.5	6.2	1	20	355	374	355	377	0.91
6	10	0.0071	1.9	11.9	3.7	2	23	384	406	383	406	0.96
7	10	9.6e-06	0.0025	20.9	0.9	1	23	413	436	413	436	0.98
8	10	0.0098	2.6	11.4	1.4	1	23	442	464	442	464	0.96
9	10	5.9e-07	0.00015	24.7	0.8	1	23	470	492	470	492	0.99
10	10	3.5e-05	0.0092	19.1	2.0	1	23	498	521	498	521	0.98

Sequence Information

Coding Sequence: ATGAATAACGCGGCAAGTTGCCGCTGCTGCCTCTCGCGGCCGCCCGACAAACAGCTGGGCGCTAAACACATGTGGTTGGGAATCAGCGAAGTTTACGGAGATATGCTGAGGAAGTGCTTCGATATTCAATTGAAGGTGGGTCTGATCAGCGGAGACGCGGGCATCTGCAACGTGTGTGTGGGGAGATTGAGAGACGCGTTCATCTTCAAGATTCAGGTGCTGCAGTGTCAGCAAGACTTTGAAGTTGTAGTCAACAAGGCACTCAATCTCAAAGatGAAGGACCAAAGATCATGATCAAACTTGAAGACGTTGATGATGACACCAATGATGTATTTAGAGATATCAAGTCAGAAGCGGTTGACCAAACCTCCGACGAGGATGACAAGAACCTCTCCCTACTTGCCATCAAGCAGCGGAATAACAAGGAGCTCACTGTAAGGAGGCTGAACAGACTGCCTGAAGCTTGCCATGTTAACCAAATTGCGAGACCGACCCGGCCTGCTAAGAGTTCTATAAAACGCGTCAATTCAGCAACAAGCTTGTCGGAGTTTGCAAGACTACAAATCAACGCGAATTTACTATTCAAATACTCAAACGTGACTCCGTTTAGTACCAAGTCTATCGCAGGAATCGTCTGTGTGTTCTGTCGCGAGACACTACCCACAATGGCCGCCCTGAGAGCGCACACACGCGAGAAACACGAGAATGACAAAATACCAATAAACAGCAAAAACAACAgtctatatttgaaaatggatATCCTCGATCTACGATGTAAGTTGTGTAATAAAGACATAGACGTCATATCCACTCTGAAGAAGCACCTAACTCAGCAACACAGAATACGATTTGAAATCTTAAAAAACTACATAGTAGAGTTCAAATTGACAGACACAGATCCAATGAACTGTGCGCGGTGCAACTCGAATTTTGAAACGTTCAAAACGCTCCTCCAACATATGAGCAGGCATTACAGAAACTACGTGTGCGAAAAATGCGCGGCAGGATTCATAAATATGCAAAAACTGAAACTGCACATGATGACACATGAGGCCGGCTCACACAAGTGTTCTAAATGCGATAAAGTGTTCAAATCTGTAATGCACGTAAGGGAACACGAGAAGTGCCACAAAGGCAAAAGAGTCACAAAATGTCCGCATTGCGACCAGATCTTCCACAGTTACTCGTTGCGGAACAGCCACATGCTGAAAGTGCATAAAACCGCCGCCGCGACTTACAAGTGTAAAGTTTGCGATCGCGGCTTTATGGTAAAGAGCAGTCTGACCATGCACATAAAGAGAGATCACTTAATGGAACGCAATCATATCTGCCGGGTCTGCGAAAGTGCGTTTTTCACCCGCCAACTCTTGTTGAGGCACATGGTTACACATAGCGGCGATAGAGTCTACCAGTGCGCGGTGTGTAACAAAACATATGCGAGAAAGAATACTTTGAGGGAGCACATGCGGATACATGACAATGATAGGAGGTTTCAGTGTGGTATTTGCAGTCTGAGGTTTGTGCAAAAATGCAGTTTGAAAGCACACATGATGTCGAATCACGGACTGGCGTTGAGTGAATGTTACAGCGAGAATGAAGTGTACACATCTAAGTCAAGTCCTGATGATAAACCGGCCAAATAA
Protein Sequence: MNNAASCRCCLSRPPDKQLGAKHMWLGISEVYGDMLRKCFDIQLKVGLISGDAGICNVCVGRLRDAFIFKIQVLQCQQDFEVVVNKALNLKDEGPKIMIKLEDVDDDTNDVFRDIKSEAVDQTSDEDDKNLSLLAIKQRNNKELTVRRLNRLPEACHVNQIARPTRPAKSSIKRVNSATSLSEFARLQINANLLFKYSNVTPFSTKSIAGIVCVFCRETLPTMAALRAHTREKHENDKIPINSKNNSLYLKMDILDLRCKLCNKDIDVISTLKKHLTQQHRIRFEILKNYIVEFKLTDTDPMNCARCNSNFETFKTLLQHMSRHYRNYVCEKCAAGFINMQKLKLHMMTHEAGSHKCSKCDKVFKSVMHVREHEKCHKGKRVTKCPHCDQIFHSYSLRNSHMLKVHKTAAATYKCKVCDRGFMVKSSLTMHIKRDHLMERNHICRVCESAFFTRQLLLRHMVTHSGDRVYQCAVCNKTYARKNTLREHMRIHDNDRRFQCGICSLRFVQKCSLKAHMMSNHGLALSECYSENEVYTSKSSPDDKPAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -