Agoe027079.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463811.1:4384040-4385863[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0014 0.36 14.1 1.2 1 23 51 73 51 73 0.95 2 15 0.27 72 6.9 0.7 3 20 102 119 100 123 0.87 3 15 0.14 36 7.8 0.1 2 23 144 166 143 166 0.94 4 15 0.0014 0.36 14.1 2.2 1 23 171 194 171 194 0.97 5 15 0.066 17 8.8 2.2 1 23 199 222 199 222 0.88 6 15 0.88 2.3e+02 5.3 0.2 2 23 225 247 225 247 0.84 7 15 0.16 41 7.6 2.2 1 23 310 333 310 333 0.89 8 15 0.048 13 9.3 0.1 3 23 362 383 360 383 0.91 9 15 0.056 15 9.1 0.7 2 23 406 429 405 429 0.96 10 15 0.00027 0.071 16.3 0.1 1 23 434 457 434 457 0.97 11 15 0.041 11 9.5 0.1 1 23 462 485 462 485 0.93 12 15 0.2 53 7.3 0.9 2 23 491 513 490 513 0.95 13 15 0.007 1.8 11.9 8.3 1 23 517 540 517 540 0.97 14 15 0.0089 2.3 11.6 1.3 2 23 547 568 546 568 0.96 15 15 0.00026 0.069 16.4 3.3 1 23 574 596 574 596 0.97
Sequence Information
- Coding Sequence
- ATGCAAGAACTACGTCAGCAATTACAACGAGACCCCATTTCTTTTGCAGACGAAATACTGCAGTTAGAGTCCGCCTCCTCCCGTAGACGACGCAATCTGTTGATCATTCTCAACAACACGACCCTCATACCGTTCAAATGGCGCGGAAAGTACCTCTGCTACTATTGCAATCAGAGGTACGCCGACCCCAATTTGCTCAGAAAGCATTCCAAGTCCCATGGAAACGTCACTCTGACCCACAAGTGTCTCGAACCGCAACGGAAGGCCAACATGGAAGTCAAACTAGATGTTTCTGAGATCAACTGCGAGCTATGCCATGAGAGCTTCAACTCTTTTGAAGAAATATTACAGCATTTGGGCTTCAAGCACAATCAAGTATACGATTTCGAAGTCGCAGCGCCCTTGGAAACCTATAGACTCTCAGACCTCAAATGCCTGGTGTGCGGTTTGGTAGCCAGGAACTTTATCAATCTAGTCACGCACACAAACCTTAACCATCCGAAGAACAGCTACCCTTGCGAGCATTGCGGACAGCAGTTTAACAAAACCAGGGATTTGGATAACCACAAAAGAAACTTACACAAAGAAGGCGGTTATACTTGTGACTCTTGCAACGAATCGTTTTCGACCAATCAGAGATTACGCTTCCATTATTTGAACACCCATTTAGCATCATGCGAGATTTGTCTAAAGCAGTTTTCGACGCTAGAGATAAAAAATAAGCATATGGCGGCAGCGCATAGTGATCTCAAGTTTGGACTCAAACACGAATATAGGCACGAAGAAATACCTGACGAAAGCGAACTGTTGGAAGCGAACTTCCAGGATTTAGCTCAGAGGAAGGAAAAGAGTAGGATGAACAGAGCTAATATTGCAATCATTCTGAATATGTCCACGGCCATGCCTTTTAAGTATTTCAAGAATCAATATCTCTGCTTTTACTGTCCGAAATATTACAATGAATGCGACGATCTCAAAGAACACACAGTTAATTCTCATGTAGCATATAACACTAAAGACAAATGCACTAAAGCGTTAAAAGGGACCGAGTTTTGTATCAAACTAGACATTTCATCGTTGGCCTGTAAAGTCTGTTTTGAGCCATTCGAAGATTTAGACTTACTTATCGATCACTTGATTTTTAAGCATAACGCGAAATACGATAGGACTATAACTGGCATCACGCAACCATTTAAATTGGCCAGGGAGAATATGACCTGTCCTGTTTGCAAAATGGAGAATTTCAACTACTTCGGAACGTTACTTCGTCATATGAATAAAAATCACagtaataataaattcatttgTGACAATTGCGGTGAAGGTTTCGGTAATACAGTATTGCTAAAAAATCATATAAATAGGCTTCACGGGGATAAAGAGTTTAGATGCGAAGTTTGCGATGCGGTGTTCAATAATATTGTCAAACTCGACGGCCACAGAGCCAAGAGTCACGGTGTCAAATACGTGAGCTGCTCAAAATGCCCCGAAAAATTCTTGAACGAATACTCAAAACGGAAACACTTGATGAGAATACATAACGTAGGTCACAAATGTACTTATTGCGATCGAATGTTCACGAAACACTCATTCATGAGAACTCATGTCAAACGTACTCACTTGAAAGAGAAGAATGTAATGTGTCCGGTATGTCACACCAAGTTCTTCGACAATTATATCCTCAGACAGCACATGGTGAAACATATAGGCGACAAAAACTTCCACTGTGATGTATGTGGTAAGAGTTTTTTCTGGAAACGAAATCTTAGAAGCCACATGTCATCTCACAGCAAACATTCACAACATTTAAACGTACAATTCTAA
- Protein Sequence
- MQELRQQLQRDPISFADEILQLESASSRRRRNLLIILNNTTLIPFKWRGKYLCYYCNQRYADPNLLRKHSKSHGNVTLTHKCLEPQRKANMEVKLDVSEINCELCHESFNSFEEILQHLGFKHNQVYDFEVAAPLETYRLSDLKCLVCGLVARNFINLVTHTNLNHPKNSYPCEHCGQQFNKTRDLDNHKRNLHKEGGYTCDSCNESFSTNQRLRFHYLNTHLASCEICLKQFSTLEIKNKHMAAAHSDLKFGLKHEYRHEEIPDESELLEANFQDLAQRKEKSRMNRANIAIILNMSTAMPFKYFKNQYLCFYCPKYYNECDDLKEHTVNSHVAYNTKDKCTKALKGTEFCIKLDISSLACKVCFEPFEDLDLLIDHLIFKHNAKYDRTITGITQPFKLARENMTCPVCKMENFNYFGTLLRHMNKNHSNNKFICDNCGEGFGNTVLLKNHINRLHGDKEFRCEVCDAVFNNIVKLDGHRAKSHGVKYVSCSKCPEKFLNEYSKRKHLMRIHNVGHKCTYCDRMFTKHSFMRTHVKRTHLKEKNVMCPVCHTKFFDNYILRQHMVKHIGDKNFHCDVCGKSFFWKRNLRSHMSSHSKHSQHLNVQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -