Agoe027078.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463811.1:4382077-4383879[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.24 63 7.1 1.5 1 23 52 74 52 74 0.98 2 15 0.001 0.26 14.5 0.0 2 23 98 120 97 120 0.95 3 15 0.011 3 11.2 0.4 2 21 141 160 140 161 0.93 4 15 0.26 68 7.0 3.5 1 23 168 191 168 191 0.93 5 15 0.026 6.7 10.1 3.0 1 23 196 219 196 219 0.95 6 15 0.078 20 8.6 0.4 2 21 248 267 247 268 0.94 7 15 0.018 4.8 10.6 1.9 1 20 310 329 310 333 0.94 8 15 0.51 1.3e+02 6.0 0.1 2 23 361 383 360 383 0.93 9 15 0.0037 0.96 12.8 0.0 3 23 407 428 405 428 0.95 10 15 0.00027 0.07 16.4 0.1 2 23 434 456 433 456 0.94 11 15 0.25 66 7.0 1.1 6 23 465 483 462 483 0.93 12 15 0.001 0.27 14.5 0.7 2 23 489 511 488 511 0.96 13 15 4.9e-05 0.013 18.7 3.0 1 23 515 538 515 538 0.97 14 15 0.0012 0.31 14.3 1.3 2 23 545 566 544 566 0.95 15 15 0.045 12 9.4 1.6 1 23 572 594 572 594 0.95
Sequence Information
- Coding Sequence
- ATGGCCTTAAACGACGATACAATGGAGAAAAATTTCTTTTCAGATAATAATCTGGACAGAACGGACTCAGATAACACAACCGTGCGTCGAAGGGATAACCAGGAAGTTCTGTTCAATAACACAACGGTTATACCGTTCAAATGGCGTGGGAAGTATAGATGCTTCTACTGCGCCGAGGACATTATAGACTATAGAGACTTTAGAAAGCATACCAAGTCACACAAGATCAATTTAGCACAACACGacccttttaaaaatattaagtcgCTGAAAATTGACGTATCGTTTGTCACTTGCGAGATTTGTGATGAATCCTTTAAAAATGTGGACGATATAATCGCACATTTGATAGTTAAACATAAGTTTGAATGTGATAAAAATCTGAGTCACAATGTTATCCCTTACAATTTAAAGCATCTCAGCTGTCCGAATTGTAGCGAACGCTTCAAATTGTATAAGGATTTGCGCACTCATGTCAATCGGTGTCGGGCAACGAGCTTGTACCAATGTGATCAGTGCCCTCACAAATATCACAGGAAACGAGACTTGGCGTTCCACATAAAAGATATCCACGAAAAAGATGGATACATCTGTAAATTTTGCTCCGACTCTTTCGTAACGCATAGTAAGCTGAAGTTGCATGTCAGAGATCGTCATATCACTGTGTGTCACTTCTGCTTCGAGAAACACCCTACCCCCGAATCAAAACGACGCCACATTGTCGCAatgcacaaaaacaaaaagtgtcCGCGGTGCGCCAAAGTGTTCCTCTCAAAGGTAGGCCTGACCAATCACCTGAAAAAATGCGTAGTCAAACCGGAGAAAGCCGAAGTCAAGCCGAATTCTGACGCGAAGCAAATTCGTGAGAACATCGTCAGTGTACTCAATATGACGACGGCAATGCCATTCAAGTTCTATATGAATAGGTTTCGTTGCTTCTATTGCACGAAGGATTTCACCGACCACGAGCCCTTACAAGAGCACACGTGGTCAGAACATCCCACTTGTGACGCAGAAGAAAGGAGCCTGAGACTCGTCCGAGGAAAAGATCCAGTCGTGAAAATCGATGTAGCATCCCTATCATGCAAAATATGTTTAGAATCCTTCGCAGAATTCGAAGCAATAACCGATCACTTGATTAAAAACCACAAGACAAACTACGATAAGACTGTAAAAAGCGTGTTTATGTCTTTCAAACTCGTAAAAGACAATATGGCCTGTCCCATTTGCGCCGAGGTTTTCAGATATTTTGGAAAACTACTGAGTCATATGAACGAAGTGCATACTAACAATAATATCGTGTGCGTCTACTGCGGTCAGACATTCAGAGGCCAACCGAACTACCGAGCTCACATCTCTTACTACCATAATGAGGATAACTTCAAATGCTTTTGCGGGGAGAAGTTCGAAAACGCCATGAAACTACGATCTCATAAAAGCAAAGCGCATAGAACCAAGTCCGTCAAATGCCCTCAATGTCCTGAGACTTTCGAGACAGTCTACCATCGTCAAAGACATCTGGTAACCGAGCATAACATGGGACATAAATGCGCATACTGCGACAAGATTTTCGTCCGAAACTCTTTCATGAACGACCATATACGACGGTTTCATTTGAAAGAAAAGAATGTGGTCTGCTCAGTGTGCGGTGATAAATTCTTCAGCAAAGTGCACCTGAAGAATCACATGGTGAAACACATCGGCGTACGGAATCACCACTGTGAGGTTTGCGGGAAGGCGTTTCTTTGGAAGAAGAACTTGACGGGGCATATGGCGTCCCACAATAAACGGGCTGCCGTCTAA
- Protein Sequence
- MALNDDTMEKNFFSDNNLDRTDSDNTTVRRRDNQEVLFNNTTVIPFKWRGKYRCFYCAEDIIDYRDFRKHTKSHKINLAQHDPFKNIKSLKIDVSFVTCEICDESFKNVDDIIAHLIVKHKFECDKNLSHNVIPYNLKHLSCPNCSERFKLYKDLRTHVNRCRATSLYQCDQCPHKYHRKRDLAFHIKDIHEKDGYICKFCSDSFVTHSKLKLHVRDRHITVCHFCFEKHPTPESKRRHIVAMHKNKKCPRCAKVFLSKVGLTNHLKKCVVKPEKAEVKPNSDAKQIRENIVSVLNMTTAMPFKFYMNRFRCFYCTKDFTDHEPLQEHTWSEHPTCDAEERSLRLVRGKDPVVKIDVASLSCKICLESFAEFEAITDHLIKNHKTNYDKTVKSVFMSFKLVKDNMACPICAEVFRYFGKLLSHMNEVHTNNNIVCVYCGQTFRGQPNYRAHISYYHNEDNFKCFCGEKFENAMKLRSHKSKAHRTKSVKCPQCPETFETVYHRQRHLVTEHNMGHKCAYCDKIFVRNSFMNDHIRRFHLKEKNVVCSVCGDKFFSKVHLKNHMVKHIGVRNHHCEVCGKAFLWKKNLTGHMASHNKRAAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -