Agoe018725.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463809.1:8887045-8889933[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.013 3.4 11.1 0.4 1 23 254 277 254 277 0.95 2 10 0.054 14 9.1 0.1 2 23 304 326 303 326 0.92 3 10 0.0015 0.39 14.0 0.5 1 23 348 370 348 370 0.98 4 10 1.9e-05 0.0051 20.0 0.6 1 23 374 397 374 397 0.98 5 10 0.24 64 7.0 2.1 1 20 402 421 402 425 0.81 6 10 0.016 4.1 10.8 0.7 1 21 431 451 431 454 0.89 7 10 1.6e-06 0.00042 23.3 1.8 1 23 461 484 461 484 0.98 8 10 0.0012 0.32 14.3 0.9 2 23 491 512 491 512 0.96 9 10 1.2e-05 0.0031 20.6 2.4 1 23 518 540 518 540 0.98 10 10 0.00037 0.098 15.9 3.4 1 23 546 568 546 569 0.94
Sequence Information
- Coding Sequence
- ATGGAGGCGTCGCAGGATACCAGCCTCCACTTCGGCGTGTGCCACTGTTGCCGCGCCCGAGGTCGCCACAGGAGTATGAACACGCAATACAAGGAGAGTGGCACCACGGAATTATACTCAGAGTTGCTCCTGGACTGCTATGGCATTGCTCTAACCAAAACAAATAAGGTCAAGTTGATCTGCATGCCCTGTGTTCAGCGTCTGCGAGACGCAATAGCCTTCAGAGAGCTTGTACTGGTAGCTGAATGTTGCTTGCTGGATCCACTGCAGCCGGCAGGCATTGAAGATAAGAAGGATGTTTCCGAGATACAGACCAATCAGATTAAGACTGAGGTTCTGGAGGATATAGATGAAACATGCAATGTGAAGCTGGAATTAGATGATAAATTTGATTCTTTTGATGATGCTGTTGATGACTACTACAATGGTATGTGTAATATGTCCTTTAACAGCGAAATCGCAGCCGCCCCCCGCGTCCCGTATCCTCCTCTCCTGGTGGAGGGGGAAGCAGCATTTCTGCGCCGGTTCCCGCATCCGCCGCGGCTTCCACGTTCACCACCAACTTCCTTCACGCGACACTGCTTGCTGTTGAGAGACAAAGTGATCTTCGCATCGGACCTCGCGCAGTTGTTGAAACGAACAGAGCACCACAGCGAGAAACCACACTACCTCGGCGAGAAGAAGGGTATCATCCTGAATATTATTACCATTCTACTGAACTCCAATGCCTGCCCCTTCCGTAGCAAAACCTCCCTCGGCTTCCCTTGCCTGTACTGCCGGAGATCCTACCAACGCATCACAGAGCTACGCAGTCATGTCGCCAGTCTACATGAGAATGCAGACGTCAGAAAGACGCTATGGAAGTACGGACCCGAAAGCCTGGTCATCAATGTCGATGTAACAGACCTAAAATGCATGATTTGTGATGAGAACATCCCTAACTTGAACGAACTGAAGAAACATCTAACAGGGTTGCATAAAAAGGAAATGTGCCAGAAGTATACGGACAGGATCCTGCCTTTCAAGTTGACAGGCGGCCCGTATGAATGCCAGGTGTGCGCGTGCGTGTTTGAGACGTTCGGTTCAGTAGAGCGGCACATGAATGTGCACTTCCGGAATTACGTGTGTAAAGACTGCGGCAACGGATTTGTTACTAAATACCGCTTGAAGGTGCATATAAAGTCGTCGCATATCGGCGGCAATTTCCCCTGCGAATTGTGCAGTAAAGTGTTCACGTCACATCAGAAACATAAAACGCACGTGGATGCCGTTCATAAGATGCTGAAGAGGTTCAAATGCCCGCAGTGTCCAGAACGCTTTAGCGAATACTTTGCCCGCCAAAAGCATTTGGTGTTCGCCCACGGCGCGGAACCTATCAAGTACAAATGCAACGTTTGCGACCGAGCCTTCGACAGACGATATACGCTATCCCGACATCTAAAGAAGGATCATCTGAAGGAGAAAAACAACGAGTGCGATATATGCGGATATAAATGTTTCACTGTGACAGAACTGCGCGTGCACATGATAAAACATGTGGGCGAGCGCACACACGAGTGTAGTGTATGTAAGAAAGCATACGCGAGAAAGAAGACACTCAAAGAGCACATGAAGATTCACACGAACGATCGTAGGCACGCGTGCGCGGTGTGCGGGCAAGCTTTCATACAGAAGTGCAGTTTGAAAGGACACATCAAGACTCACCATCCGGAGTTTAATATTGACTGA
- Protein Sequence
- MEASQDTSLHFGVCHCCRARGRHRSMNTQYKESGTTELYSELLLDCYGIALTKTNKVKLICMPCVQRLRDAIAFRELVLVAECCLLDPLQPAGIEDKKDVSEIQTNQIKTEVLEDIDETCNVKLELDDKFDSFDDAVDDYYNGMCNMSFNSEIAAAPRVPYPPLLVEGEAAFLRRFPHPPRLPRSPPTSFTRHCLLLRDKVIFASDLAQLLKRTEHHSEKPHYLGEKKGIILNIITILLNSNACPFRSKTSLGFPCLYCRRSYQRITELRSHVASLHENADVRKTLWKYGPESLVINVDVTDLKCMICDENIPNLNELKKHLTGLHKKEMCQKYTDRILPFKLTGGPYECQVCACVFETFGSVERHMNVHFRNYVCKDCGNGFVTKYRLKVHIKSSHIGGNFPCELCSKVFTSHQKHKTHVDAVHKMLKRFKCPQCPERFSEYFARQKHLVFAHGAEPIKYKCNVCDRAFDRRYTLSRHLKKDHLKEKNNECDICGYKCFTVTELRVHMIKHVGERTHECSVCKKAYARKKTLKEHMKIHTNDRRHACAVCGQAFIQKCSLKGHIKTHHPEFNID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00161808;
- 90% Identity
- -
- 80% Identity
- -