Agoe041352.2
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463813.1:37791049-37793855[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00028 0.074 16.3 0.5 1 23 203 226 203 226 0.97 2 12 0.00026 0.068 16.4 0.2 2 23 270 292 269 292 0.96 3 12 0.59 1.5e+02 5.8 4.9 1 23 298 321 298 321 0.92 4 12 7.3e-05 0.019 18.1 2.1 1 23 352 374 352 374 0.99 5 12 0.065 17 8.9 2.7 2 23 379 401 378 401 0.92 6 12 0.02 5.2 10.5 0.1 3 23 425 445 424 445 0.97 7 12 0.081 21 8.5 6.3 1 22 451 472 451 475 0.89 8 12 0.034 8.8 9.8 2.1 1 23 487 510 487 510 0.96 9 12 4e-05 0.01 19.0 1.0 1 23 516 538 516 538 0.98 10 12 0.00013 0.033 17.4 2.1 1 23 544 566 544 567 0.96 11 12 0.0018 0.48 13.7 2.5 1 23 573 596 573 596 0.95 12 12 0.00034 0.09 16.0 0.6 2 23 602 624 601 624 0.96
Sequence Information
- Coding Sequence
- atgtataAAACTCCAAGTGAAACTAGAAATACTATTTCTAGTGAAGAAATACCATTTGCTgaatatgataaaataaaatctaacctcaaaaatatatttcagcCAGACATTTTTTGTGGCATATGTTTGGATAATGAGAAATCAATGATACATTTTGAATACTTGTATCCCACTAAGCAGGACACATTCGGAGAAATAATGAGATTCGTATTTGGTGAAATGATATTGGATGAGATAGCTAGCAAAAGCGTTTGCCAAACATGCGCAGAACAAATAAAGGTGTCTTACGAACAGATCCTGAAAGTAAGAAATTCCAGCAAAATCATTAACAGTTATCTAAAACAAATAGAAATCCAAATTGACCCTGTCAGTACTATGTTGGAAACAACAAATAAATGTGAGTTTGAAAACACAATCATTCTGCTGCAGAATAATGTTGATCCACCCAAAGAACCTATTGTTACTGTTGAAGAAATACCGAAGGTTCAAGAAAAGGCATGCTTCAGTGAAGAGGAATATTTAGACCATGATACTGATTATGATGAGCTGGAAAGGAATACAAGAACACCAAAAATTAAGCATCATCAAAGCAGCACTGAAAAAGAATTTGTTTGCCAGGTTTGTTTAAAGGAATTCACCACAAAAGCAGGTGTATCGAAACACATGTCAACCCAGCATAAAAATAGCAATATCGAAAGCAAACTTTATGGTAGAGAATTGTGCTTGGAATGTAGAGATTCACCATGCGTTCATGAAAAATACTTGCAGCACGTAAAAGAGCAAAGAAAAAGTGGCTGTAGCAAGTTGAAATGCCCTGACTGTGATTATGAAACAGCAAAGAAAGTCAACCTTTTATCACATATTAACAAGGAGCATTTGGACCGATTTCCATTTCTCTGTGAAAACTGTGGCCACACTTTCCCCTCAAAAAAACTGCATCTACGTCACAAGAGACTTTACCACAGCCTCTGTTGTGAGTTTTGTGATGATATGTTCCTGGAGCCTGAGGACTTAGCTGACCACCAGGATCTCTGCAAGACTACCCACAGACTGTTCAAGTGTAACCACTGCCCTGGTTCGTTCAACACAAAAGAAAGACTCATTGTTCACATCAAGAAGCATGAGAACACCTTATGCTGCAATATGTGCACAAAGAAAGTTAAAAATGAGTACTTTCTGGTTCGCCACCAGTACTACGCTCACAAGGCcaaaaagtttgtcaaacgaCAATCCCAATCTGCATTAAAAAGCAACAATCAAAGGCCTAGGTTCTGCTCCATTTGTCCACAAGTTCTTTATTCTCTTGTGGATTTAAAGCAGCATCTAGCCAGCCACTCATCTGGTGAGAAACACCACTGTCATACTTGCAAGAGGGTTTTCGACACACGCAAGCAATATAACATCCATGTCACGTCCCAGTCGCATCTCAAAAAGGTGGATCCAGAAGCCAAGTTCAGTTTTAAGTGTCCTTCTTGTGAGTTCACATGTAGAAGCAGCTTATCCCTGGAGAATCACAACAACTCAGCGCATTTAAAGGTGAAACCATACCAATGTTGGGCTTGCAACAAGAACTTCACTACGGCAACCAATTTGAGGTATCACTTAGAACGTCATCAAGGACTTAAGAAGTTCCAGTGTAGTGAATGCAGTAATATGTTTACTTCATCTGGGGGCCTAAAGAAGCATGTGCTGCGACACCATACAGACAAGCGTCCATATCCGTGTGATATGTGTGACAAAACATTTGTCAGTCAGAGTGAATGCAAACTCCACAAACTGAGGAATCATTCAGAGAAGACTGTCACTTGTCCGATGTGCGAGAGCAAGTTCCATTCCAGTGCGAACCTGAGGGCGCATATTAATAAGGTACACTTCAAGGGAAATGGGTTAAATGAGTTCATAAAGTCTGGTAACGTGAGCCAGGAGATTTATGAAATGTGTAGAGACCATAGAGCCacgttttaa
- Protein Sequence
- MYKTPSETRNTISSEEIPFAEYDKIKSNLKNIFQPDIFCGICLDNEKSMIHFEYLYPTKQDTFGEIMRFVFGEMILDEIASKSVCQTCAEQIKVSYEQILKVRNSSKIINSYLKQIEIQIDPVSTMLETTNKCEFENTIILLQNNVDPPKEPIVTVEEIPKVQEKACFSEEEYLDHDTDYDELERNTRTPKIKHHQSSTEKEFVCQVCLKEFTTKAGVSKHMSTQHKNSNIESKLYGRELCLECRDSPCVHEKYLQHVKEQRKSGCSKLKCPDCDYETAKKVNLLSHINKEHLDRFPFLCENCGHTFPSKKLHLRHKRLYHSLCCEFCDDMFLEPEDLADHQDLCKTTHRLFKCNHCPGSFNTKERLIVHIKKHENTLCCNMCTKKVKNEYFLVRHQYYAHKAKKFVKRQSQSALKSNNQRPRFCSICPQVLYSLVDLKQHLASHSSGEKHHCHTCKRVFDTRKQYNIHVTSQSHLKKVDPEAKFSFKCPSCEFTCRSSLSLENHNNSAHLKVKPYQCWACNKNFTTATNLRYHLERHQGLKKFQCSECSNMFTSSGGLKKHVLRHHTDKRPYPCDMCDKTFVSQSECKLHKLRNHSEKTVTCPMCESKFHSSANLRAHINKVHFKGNGLNEFIKSGNVSQEIYEMCRDHRATF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00161807;
- 90% Identity
- -
- 80% Identity
- -