Agoe027140.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463811.1:4788440-4792409[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.25 65 7.0 1.0 1 23 56 78 56 78 0.91 2 24 0.0098 2.6 11.4 0.3 2 23 106 128 105 128 0.96 3 24 2.2e-05 0.0056 19.8 3.3 2 23 152 173 151 173 0.96 4 24 0.079 21 8.6 0.3 2 23 177 198 176 198 0.96 5 24 0.66 1.7e+02 5.7 7.0 1 23 203 226 203 226 0.94 6 24 9.1 2.4e+03 2.1 3.4 2 23 238 260 237 260 0.90 7 24 0.45 1.2e+02 6.2 0.1 1 23 266 289 266 289 0.95 8 24 1.2e-05 0.003 20.7 2.9 2 23 294 315 293 315 0.97 9 24 2.9e-05 0.0076 19.4 2.7 1 23 321 343 321 343 0.98 10 24 2.4 6.4e+02 3.9 0.1 2 23 480 502 479 502 0.88 11 24 0.0096 2.5 11.5 3.7 1 23 525 547 525 547 0.98 12 24 0.24 62 7.1 1.0 3 23 553 573 552 573 0.96 13 24 4.8e-06 0.0012 21.9 1.1 1 23 578 601 578 601 0.96 14 24 3.1 8.1e+02 3.6 3.5 2 23 611 633 610 633 0.88 15 24 0.00084 0.22 14.8 1.4 1 23 639 662 639 662 0.97 16 24 0.0014 0.36 14.1 4.5 2 23 667 688 666 688 0.96 17 24 1.1e-05 0.0029 20.7 2.6 1 23 694 716 694 716 0.98 18 24 0.18 48 7.4 0.7 1 23 779 801 779 801 0.95 19 24 0.033 8.6 9.8 4.2 1 23 873 895 873 895 0.98 20 24 0.021 5.5 10.4 0.7 2 23 900 921 899 921 0.96 21 24 0.00019 0.051 16.8 1.6 2 23 927 949 926 949 0.96 22 24 0.52 1.4e+02 6.0 0.9 2 23 958 980 957 980 0.94 23 24 1.5 4e+02 4.5 0.2 1 23 986 1009 986 1009 0.89 24 24 0.03 7.8 9.9 2.3 2 23 1014 1035 1013 1035 0.92
Sequence Information
- Coding Sequence
- ATGAACTGTAAAGAGAAAAATTATGTTTGTTCCCCAGGAAAGGTGGATGGGGAGCGCCTCCTTCCGCGGACTAGTATCTGGCAAATGACCATATCTGAGCGACAGAACGCCGCGACCTTCCTCGAACACTCCAGCGTCCGCCCCTTCTACTACCAACAGGCCAACTTTAAATGTTTCTATTGCAACGAAGTGTTCCCGGAAGTGCACTCAGTGCTACAACACTCAGCCAGTCACACCACGCCTGACCGAGCCACGCTACTCAAACTACACCTTAGGAAGGGCAAACGAGTCATCAAAGTCGACATATCCGGCCTGAAGTGTAACATCTGCGAGCAGAAGTACTCTGAACTAGACGACATTCGCAAACACCTCACAACCGCTCACAAGAAAGAGTTCAATTCCGCGGGAAACGGCCTCATGGCGTACGATTTGAGTTCCAACAACGGCTTACTTTCGTGCCACAAATGCGGGAAGACCTTCAACTCGTTCTTTCTTCTGAATAGACATATGAATGCTCATTTTAGCGTCGTGTGCGAGACTTGCGGGCTCGGCTTCATGTCGCACCAGCGGCTCATAAACCACCGCATTGTGCATCAGAATGGTGTCCACAGCTGTGCTCATTGTCACCTAGTCTTCCCCACCAAACTGAAGCTCCGCTACCATCTGTTCAAGAAACATGAGGTCACAAACGCGAAGAAAATAAAACCGCTTAAATGTCCGCACTGTTTAGAACGCTTTGCTGAGCATTACCGGAAGATGACTCACTTAAAAGAATCTCACGGGATTACGTTCACATTTGAATGCCAAGCGTGCAATGCAGTATTACCCACTCGCCGAGCGTTAACGGAACACACGACAAAACTCCATACACAAACTATTCAGTGCAAAATGTGCGGCAAATGCTTCGGGACGAAATCCCTTCTCAAAATGCATACGCGGGGGCATACGGGCGAACGTAACTTTATATGCAACATCTGCAATAAATCGTACATGCATGAGCGCACGTTGCGTCAGCACATGCGCGTGCACTCTGCGCCCATACAGCGAGTGGCGTGTGCTCAGTGCGGTGCGAGCTGTCTCAGCGGCGCCGAGTATAGTCGCCACGCGAGGCAGTGCCATCCGCAGTGGCAAGTCAGGGGGAGCCTCAACTTTGAGAGAGTTCAGCTGTCGCAGAGACGACAGGGAGCCGTCAGCAGTATATGGGAGATGACCGTCTCCGAGAGACAGAACGCCGCCACCTTCATAGAGCACACGACGGTGCAACCATTCCTCTACTGCAGATATTACTTCAAGTGCTTCTACTGCCGGGAGCACCACGCCGACATCGGCACCCTTCTGAAACACACCTCCGGTCATCGCGCGCCCGACAGAGAAGACATACTCAAACAACTACTGCCGAAAGGAAAACGAACCCTCAAAGTCGATATATCCACTCTCAAATGCAAAGTATGCGATCTATCCCTACAAGACATAGATGCGGCGCGAAAACACCTAATCGACCAACACGGAATGACTTTCACCGAATCCGGGAATGGGATTGTGGCGTACGATCTCACCCAAATGAACGGACAGTTCTCATGCCACTTGTGCAAGAAGACCTTCCAAACGTTTATTATTCTAAACAGACATATGAACGTTCATTTCAGTAATGCGATCTGCGAGACTTGTGGGATGGGGTTCATGACGCATCAGCGCTTAATGCAGCACAAAGAGATTCACCTGCCAGGCGGGTATCCTTGCAAGCGATGCGGCAAAGTTTACACGACCAGCTCCAACTTGCGCTACCACGTCGAGAAGACCCACGAGGGCactacgaagatgaggatgctGCGCTGTCCGCATTGCCAAGAGCGATTTGTGGAACACTTCAGGAAGCTGAAACATCTGAAGGAGGTCCACGGAATCACCTTCACCTTCGTCTGCGAAGTGTGTAACTCTACGTTCACCAGTCGCAGAGCGTTGACGATGCACACGAATAAGTTCCACACGCAGAAAACGCAGTGTGAGGTGTGTAAGAAGAGCTTCAGCTGTCGCAGCACTCTCAAGAAGCACATGGTCTCCCACACCGGAGAGAGGAACTTTGTCTGCACGATCTGCCAGAAAGCTTACAGGCATCAGAAGAGTCTGAGGCAGCATGTCAGAGTTCACAATCAGGATGATATCTCCCGCTCACTGTGTGCCGAGCCGAAGGCGGCTTGCGgaggatgtggctacagctgcAAGGAATACAGTCCTGGCGGCGGTACGTGGGAGCTGTCGGTGTCGGAGCGACGCTCGGCCGCTATCTTGCTGGCGCACACCACCGCACGCCCCTTCACCTTCATGGGGCACACGTTTAAGTGCTTCTACTGCCCGCAGTACCTGGCGAGTGCGCACGCGCTGCTGCAGCACACCGACGCACACCAGCCGAGTACAGTGGCGGCGCTGCTGCAGCACCACGTGACGCGGCACAAGCGCGCGCTGCTCGCCGACACGTCTGCGCTCGCGTGCCGGCTGTGTCGGCGCGGCCTGACAAGCCTGCGCGCCGCCAGCCGGCACCTCGCTCGCGAGCATGGCCTGCAGCCCGACCCCGCCACCGCCATCGTCGAGTACCACCTCTCCCAAGAGACAGACTCGTTCGTGTGCCATCTCTGCGGCGACAAGTTCCGCGCGTTCACACTGCTGCACCGACACATGAACAGCCATGTCGGCAGGCTCGTGTGCGAGCGCTGCGGCGAGGGCTTCCTCAACCAGCGTCTGCTCACACACCACCTGGAGAGACACGACGCCGTCAAGCTGAGATGCAAGGAGTGCGACAGAGAGTTCGAGAAGCGAAGCCAGCTGCGCTACCACGTCCAGCGGCAGCACCGCGGCAAGCGCGCCAAGCGCAAGCAGTGTCCGCACTGTGCGTTCTCGTTCGTCGAGCACGCGGCCAAGATGGCGCACTTGCGCGACGCGCACGGCATCCGCGCCGCGTTCCCGTGCGGCGCCTGCCCGCGCGTGTTCCCCTCGCGCCGCGCCTGCACCGCGCATGCCACGCGCGCGCACACGGAGCGCTGGCGCTGCACGCATTGCGCGCGCTGCTGCTCCACGCGCGGCGAGCTGGCGGCGCACGCAGCGGCACACGGCGCCAGCTCCACGCGCGGCAAGCTGGTGGCGCACGCGGCGGCACAAGGTGCTAGCTCCACGCGCGGTGAGCTGGCGGCACATGGCGCCAGCTCCACACGCGGTGAGCTGTCGGCGCGAGCGGCGGCACACGGCGCCAGCTCCACGCGCGGCGAGCTGGCAGCGCACGCGGCGGCACACGGCGACAGCTCCACGCGCGGCGAGCTGGCAGCGTACGCGGCAGTACACGGCACCGAGCCTCCTTCCTGCAACGCGTACGATAGCCGCCagcgcgccggcgccggcgagACACGGCAGGACGATGGCGTCCCGGGCACCGTCACCAAATCGATGCCGATAGAACAGTAG
- Protein Sequence
- MNCKEKNYVCSPGKVDGERLLPRTSIWQMTISERQNAATFLEHSSVRPFYYQQANFKCFYCNEVFPEVHSVLQHSASHTTPDRATLLKLHLRKGKRVIKVDISGLKCNICEQKYSELDDIRKHLTTAHKKEFNSAGNGLMAYDLSSNNGLLSCHKCGKTFNSFFLLNRHMNAHFSVVCETCGLGFMSHQRLINHRIVHQNGVHSCAHCHLVFPTKLKLRYHLFKKHEVTNAKKIKPLKCPHCLERFAEHYRKMTHLKESHGITFTFECQACNAVLPTRRALTEHTTKLHTQTIQCKMCGKCFGTKSLLKMHTRGHTGERNFICNICNKSYMHERTLRQHMRVHSAPIQRVACAQCGASCLSGAEYSRHARQCHPQWQVRGSLNFERVQLSQRRQGAVSSIWEMTVSERQNAATFIEHTTVQPFLYCRYYFKCFYCREHHADIGTLLKHTSGHRAPDREDILKQLLPKGKRTLKVDISTLKCKVCDLSLQDIDAARKHLIDQHGMTFTESGNGIVAYDLTQMNGQFSCHLCKKTFQTFIILNRHMNVHFSNAICETCGMGFMTHQRLMQHKEIHLPGGYPCKRCGKVYTTSSNLRYHVEKTHEGTTKMRMLRCPHCQERFVEHFRKLKHLKEVHGITFTFVCEVCNSTFTSRRALTMHTNKFHTQKTQCEVCKKSFSCRSTLKKHMVSHTGERNFVCTICQKAYRHQKSLRQHVRVHNQDDISRSLCAEPKAACGGCGYSCKEYSPGGGTWELSVSERRSAAILLAHTTARPFTFMGHTFKCFYCPQYLASAHALLQHTDAHQPSTVAALLQHHVTRHKRALLADTSALACRLCRRGLTSLRAASRHLAREHGLQPDPATAIVEYHLSQETDSFVCHLCGDKFRAFTLLHRHMNSHVGRLVCERCGEGFLNQRLLTHHLERHDAVKLRCKECDREFEKRSQLRYHVQRQHRGKRAKRKQCPHCAFSFVEHAAKMAHLRDAHGIRAAFPCGACPRVFPSRRACTAHATRAHTERWRCTHCARCCSTRGELAAHAAAHGASSTRGKLVAHAAAQGASSTRGELAAHGASSTRGELSARAAAHGASSTRGELAAHAAAHGDSSTRGELAAYAAVHGTEPPSCNAYDSRQRAGAGETRQDDGVPGTVTKSMPIEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -