Agoe088839.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463826.1:22571547-22584012[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9.9 2.6e+03 2.0 0.5 3 23 627 644 625 644 0.57 2 10 4.1e-05 0.011 18.9 1.1 1 23 650 672 650 672 0.98 3 10 0.075 20 8.7 1.6 2 23 679 700 678 700 0.90 4 10 7e-06 0.0018 21.3 0.2 1 23 706 728 706 728 0.98 5 10 3.9e-06 0.001 22.1 0.7 1 23 734 757 734 757 0.97 6 10 0.00016 0.041 17.1 0.2 2 23 880 901 880 901 0.97 7 10 0.00031 0.08 16.2 6.7 1 23 907 929 907 929 0.98 8 10 0.00019 0.051 16.8 1.4 2 23 937 958 936 958 0.97 9 10 5.4e-05 0.014 18.5 0.5 1 23 964 986 964 986 0.98 10 10 0.00055 0.14 15.4 1.3 1 23 992 1015 992 1015 0.96
Sequence Information
- Coding Sequence
- ATGAGTGAACTTCCGTTTATCTGGACACCTAAACGGACAAGGAAACTGTTCGAGCTACGTTTTGAGCATGACTGGCTCTTCAAGAATAAAAAACAACCATGGCATGATTTTCGAAAAATATTACTAAAGAATGGATTTCCTGGAGACATGACTGTAGACCATGTTCGGAAGAAGTGGTCCTATACCTATgatactTACAGGATAgctaaaaaggaaaaaagaagGTCGTGGAAGTACTTCAAAATGTTTGAGAAACATTTTGGAAAAGCTAAGATTCTTGATAATAAATTTGAATCATGGAATGATGAATGGAGATTGAAGCTAATTGAATTTGTCTCTGAAGCTACATCAGTGAATAAGGATGTACAAAATATGTGGAAGCAGGTTGAGAGATCTCTTCGCACCCAGAATCTTCCAAGCGATTGTTGTATTCAAGATCTAAAAGAACTTTGGAATCATTTAAAAAGTACATTTAATCGCAAGCATCGTCTGAAGGTCCGCCGCAGCGACGCCGCCTGCGACTGGCCGCTCTACTCCGCGATGCTGGAATACTACGCGAGCCACGACCGGGAGCTGCTGCGCCGGGTGGAGGCCGACTCGGGCTGGCCGGTGCGGGGGCTCGCTAGAGGCAGCAGGAGACATAGCGCGCCGCAGGGGGAAGACGAGTGCGAGTTCCAGTGGTCCAAAGACATCACGGAGACATTCATTCAAATCAGAATGCAGCATGACTGGCTGTTCAAAGACAAAAAGTGGGCGTGGAACGACCTCCAAGCGATAATGGTGAAGGAATATGGATTCCCTAAAACATTGAATAATAGAGAACTTTGTCGGAAATGGGCTTCACTTTTTGCTGAATACCAAAAGGCGGTCGCCACGAACAACTCTGCCTGGGTGTACTACCATCTGTTTGAGTGTTATCTTGGTGAAGGCAGCTTCAGTTTTAACCCTCTTATTGGATGGAGTGAAGAATGGGTGTTGAAGTTCATTGACGCTAGAATTGAGTTCGAACATATGTTTCTAGAAAAAGTCACCAACAGGGATCAACAGACAGGCGCGTGGAGAGAGGTCGAGAAAAGGTTGCGCAGTAGCGGGCTGCCGCTCGATCATAGCTTGCTCGACATCCCGGAACTGTGGACGCACCTCACGAAAACTTTTAGGTGGAAAAGAAAATTCGCCGACAAGGGCATGCTAACCGAACAATGGCCTTACTACGAACAAATGAACAAATACACGGAGTACCTCAAAACTATGGACACGCCCATAGCCAAGCTCGGCATCAAGAAAGTAGCGATGATACAAAAAAACGATAATGTCAATGATATGGATACGACAGCAGACGACGCAGTCGATGATGACAATTTCGACGACGACATGAAGCTATTCGACCTGAAGCGGAAATTGAAGAAGCCTAAACAAGAGAAGTTGGATTTTGTGCCGTGTCGCGCTTGCAATACGGAGGAGGGCAGTTACAACATATTCGAGGCGTGTGACAGCGAGGGCACGGACTTGGCCAGCAAGCTCAGGATCATCGGCGGCATTGAGATCGAAAAGACGGATAGCTTACCAAAACAAATATGTTTCAACTGTCTTAAAGAGCTAGAAAATGCCTTCAGCTTTAGACGAAAATGTTTAGAAACAGACAGAGAACAGCGGACCAACATTACCAACATCGCACCTATTATAGTCAAACTAGAAACCGAGCACATGGCAAATTATGAAGTGCACAAGTCTGATTATCCCGACCTCGAACCGTTCGACGACTGTCCGAGCGACGTGGAAATATTCAAAGACGTAAAACCTATACTAAAGAAAGAAACCAAACGCACATTCAGACGAAAAAAGAAGATGCCCAAAGACCGTAACGCATACAAGAAGATGTGTGAAATATGCGGCGCGCACACGAGCAACCTCAGCGGTCATCTCGACATGCATGCCGCAGGGAAAGCCTACTCGTGCGACATATGCTCCAAGAAGTTCAAATTCCGAAGCGGCTTGCAGATACACCGAGCCATGCACGATCCCACGCCAAAGAAGACCTGTGAAGTCTGCGGGAAGACCTTCCACATAGTCGCTCAATACAAGAGGCACTTTGTATACCATGCGAATGAGAGAAAATACGCATGTGATACGTGTGGGAAGCGCTTTAATACGCCTGACATACTAAAGGTTCACATGAGGATGCATAACGATGAGAGGCCGTTCCCGTGCCCGGAATGTGGGAAGACGTTCCGGACCGCGGGCTGCGTCAGCCGGCACAGGAGGATCGTGCACAAGAAGATTGCCAAAACTATAATCGACATGAGGGATAACTTATCGCAACAAATCTGCTTCAGCTGTTACAAGGAGTTAGAAACCGCCATCAGTTTTAGACAGAAATGTATGGAATCCGACAGGGAACAGCGGACTTATCTCAGCAAGATCAGCCCACAAAGGGAAGTGAAAGTTGAAATTATGTTTGATGATCATTTTAGTAATTACGAGGATGATATCCCAGAATCCCTTGACGATGCCTGTCCAAGCAAAGACGCCGTGTTTCCAAATAAAAACtcacaaaaaacaaagaaaataccaAAACGAGTAGTAACCAATACGAAACCGAAAAGAGGTCGAAAGAAAAAGCGCCGCGACCACTCTGCAGTGTGCGATATCTGCGGTAAATATACGAAGGACAAATATACACTGCAAGTCCACCTCATCAGCCACACGGAGGAAAAGCCATTCTCTTGCGACATTTGCCACAAAACCTTTAAATACAAATGCAACGTTAGAACACACATGTCCATCCACATCCCCGTCGCTCCCGCGAAGACCTGTCACATCTGCGGCAAGGGGTTCCCCTCTGTAAATAAGTTGAACCGTCACTGGGAGAAGCACGCGAATGAGAGGAAGTTCTCCTGCGAGACTTGCGGCAAGCGGTTCAACTACCCCGAGGTGCTGGTGGTGCACAAAAGGACTCATACTGGCGAGCGGCCTTTCGCCTGCTCCGAGTGCGGTAAGACCTTCCGGACCGGCGGCTGCGTCAGCAGGCACAAAAGGATCGTGCACAAGATACACAATAATTACCGAATTCCCCAACACTTGAAGATGTGA
- Protein Sequence
- MSELPFIWTPKRTRKLFELRFEHDWLFKNKKQPWHDFRKILLKNGFPGDMTVDHVRKKWSYTYDTYRIAKKEKRRSWKYFKMFEKHFGKAKILDNKFESWNDEWRLKLIEFVSEATSVNKDVQNMWKQVERSLRTQNLPSDCCIQDLKELWNHLKSTFNRKHRLKVRRSDAACDWPLYSAMLEYYASHDRELLRRVEADSGWPVRGLARGSRRHSAPQGEDECEFQWSKDITETFIQIRMQHDWLFKDKKWAWNDLQAIMVKEYGFPKTLNNRELCRKWASLFAEYQKAVATNNSAWVYYHLFECYLGEGSFSFNPLIGWSEEWVLKFIDARIEFEHMFLEKVTNRDQQTGAWREVEKRLRSSGLPLDHSLLDIPELWTHLTKTFRWKRKFADKGMLTEQWPYYEQMNKYTEYLKTMDTPIAKLGIKKVAMIQKNDNVNDMDTTADDAVDDDNFDDDMKLFDLKRKLKKPKQEKLDFVPCRACNTEEGSYNIFEACDSEGTDLASKLRIIGGIEIEKTDSLPKQICFNCLKELENAFSFRRKCLETDREQRTNITNIAPIIVKLETEHMANYEVHKSDYPDLEPFDDCPSDVEIFKDVKPILKKETKRTFRRKKKMPKDRNAYKKMCEICGAHTSNLSGHLDMHAAGKAYSCDICSKKFKFRSGLQIHRAMHDPTPKKTCEVCGKTFHIVAQYKRHFVYHANERKYACDTCGKRFNTPDILKVHMRMHNDERPFPCPECGKTFRTAGCVSRHRRIVHKKIAKTIIDMRDNLSQQICFSCYKELETAISFRQKCMESDREQRTYLSKISPQREVKVEIMFDDHFSNYEDDIPESLDDACPSKDAVFPNKNSQKTKKIPKRVVTNTKPKRGRKKKRRDHSAVCDICGKYTKDKYTLQVHLISHTEEKPFSCDICHKTFKYKCNVRTHMSIHIPVAPAKTCHICGKGFPSVNKLNRHWEKHANERKFSCETCGKRFNYPEVLVVHKRTHTGERPFACSECGKTFRTGGCVSRHKRIVHKIHNNYRIPQHLKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -