Agoe037016.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463812.1:33488596-33513918[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 1.4 3.5e+02 4.7 0.2 3 23 113 133 111 133 0.96 2 22 2.3 6e+02 4.0 0.1 2 23 137 159 136 159 0.93 3 22 3.2 8.3e+02 3.5 0.5 3 23 403 424 401 424 0.94 4 22 0.058 15 9.0 0.4 1 20 432 451 432 453 0.95 5 22 0.056 15 9.1 0.4 2 23 463 484 462 484 0.94 6 22 1.2 3.2e+02 4.8 0.7 1 23 500 523 500 523 0.90 7 22 1.9 4.8e+02 4.3 0.3 1 23 532 555 532 555 0.93 8 22 2.5 6.6e+02 3.8 2.4 6 23 605 624 599 624 0.84 9 22 6.8 1.8e+03 2.5 0.0 2 22 635 655 634 657 0.84 10 22 0.11 29 8.1 0.5 1 23 662 685 662 685 0.94 11 22 1.2e-05 0.0031 20.6 0.6 1 23 691 713 691 713 0.96 12 22 2e-06 0.00053 23.0 1.5 1 23 721 743 721 743 0.98 13 22 0.00016 0.042 17.1 2.3 1 23 748 770 748 770 0.96 14 22 0.18 48 7.4 5.1 1 23 776 798 776 798 0.98 15 22 8.1e-06 0.0021 21.1 3.4 1 23 804 826 804 826 0.98 16 22 0.00042 0.11 15.7 3.3 2 23 833 854 833 854 0.98 17 22 0.00073 0.19 15.0 0.2 2 23 861 883 860 883 0.96 18 22 0.00067 0.18 15.1 0.3 1 23 888 912 888 912 0.97 19 22 0.0027 0.72 13.2 0.1 3 23 935 957 934 957 0.96 20 22 0.0027 0.72 13.2 0.1 3 23 979 1001 978 1001 0.96 21 22 0.0027 0.72 13.2 0.1 3 23 1024 1046 1023 1046 0.96 22 22 0.88 2.3e+02 5.3 5.2 1 23 1052 1075 1052 1076 0.95
Sequence Information
- Coding Sequence
- ATGGCATCCTCCGAGTCCGATGACGAACCGCTCGCTGCACTAGCAGCTATCAAGAAGTTAAATCCATCAGAGTTTGGCAATTACTACCCAGAAACTACATCCTCTGCTAAACCTCCGAAACATAGGGAAAAGAAAAGACGACTCCCTCTGACAATAGAAATCAAAACAGTGTCGAAGAACTTATCCCCAACTGTGATAGAAAGGCCAGATGACGTTTGGCTGTATCTAAAAGATTTCAATCAGGCTGGCCCTTACAGCTGCCTTCTGTGTTCTGAGTGGTTTATCAATAGGTCTAAAATTATCGTGCATTACGTCTTGACGCACAAGAAGGATTTTTGCGGGATATGCAGATACTTTGTACCAAACAGAGAGTCATGGATCGAACACCAAAAATTCCATGTACCATGGCAATGTTCTCAATGTATTAGCAACTTTGATACAGAAGCAGAATTACGCGCTCATTTCAGCACAGTACATAAACTGGTTCACTGTCGTTTGTGTTGTTTCCGAATCCCTGATAATGATCAGTACAATCGTCATTTGTATGAAAGGCATAATGTTACTAATGTCTCCAACAAAAATGAGCCTACTCTGTGGGAATTGGAGTATGAAGGTTGTCCGAAATTTCTCTGCTTACTCTGTTCTAAGTCTAATAACTTATCAACAAATTACTTCAACCACTACATGTGCCACCATAGAATTACTCTTAAATGCTTTGCAAGCCTGATCTCTGGTACAGATCCACCCTTCTCAATCACTGGAGCCTGCATTAGTACAGAGTTTTTGGAGAGTCAATTAAAACAGCAGCCAAACTATGGTTATATGGATATCGAGTTGAAACCTCCAGCGGATATAATTGACAACCCTGAAAAATCTAAGACAATTACCAATTTCACTACTCTCATACCTGAAGTTAAACAGGAATGTATGAGTGACCAAGAAAATGAGTTATCAGGAAATGAAACCATATCGACATACATAAAATCTGAAAAGAGACACTACCCACCATTACCAGATGATGGACCCTGGAATACATACAAAGGTGATGAAGACTTTGATATCACATCCACAGAGTTGTTTCTGCTTCAGCAATGTTACTTTGAGTACATGAACAACACTTTCTGTGACATAAACTCCAACATAATGCCAAAAAATTCAGAAATTGTGTATGACATACACAAATATGACATCATAAAAGATATTGACTGTCCCATTTGTGAAGTTAATCACAAAACTGTCTCAGAGTTCAATAGTCATATCACAAAAATGCATGGTGTAAAAATTATACCGAGTTACTCTTGTAGAGTTTGCGCAGCAAACTTTGATACTCAAAGTGAGCTATGCAACCATGTAACAGAAGAACTGAAGGATTTTGAGGACCTTTGGATTTGTCAGTTTTGTGACCAAGAGTTTGACACGAGAGAAGCCACTCGTCGACATTTGACTGAACATTGGAGTAGCATTGAGATGGACAACTGCTTTAGTCCACATTTGGGTTTCAAGTGCAAATATTGTCCAACATTGTTTTGGAATGAGATAGACAGAGAGACTCATCAGAATAGAGTTCATTTTCCGATGCACAAGGAGGATTACTACAGATGTGAGCCTTGTGGGGACATCTTTAGCGATAAGATATGGTTCACGTACCACTACATACAGAACCACTACCAACACGATGAAGAAGCAACAAATCCTTCATTCCTGTTCAAATGTTCCCTCTGCTGTACCGTCCTGAACAATGTGGAAACAATGAGACGCCATTTTGCAGACAAGCATGGGGAGGCGCGGAAGATTTTCTGTTCCTTCGACAACTGTAAACATAAGCCCTTTGCGCAGAGGAAATCCTTCAAGATACACTTGAAGGTGATGCACAACCCTCTCGCCCGCCCCCCCGGCACGGTGCGCTGCGGCGCGTGCTCTCGCGAGTTCAGCACCGCACGCGCAGCGGCCGCGCACGCCGCTCTCGCGCACGGCGCCGCACGCTTCAAGTGCAAGTTGTGCGAACGCGCACTCGCCACGCAGGACGAGAGGAAGCTGCACTACCTGCTCAGCCACCCGGGCCGGCACCCCTTCGAGTGCAGCGTCTGCGGGAAGTCGTTCCCCTACAAGTCGTCGCTCTACACGCACAGAGCCGAGCACAAGAACACGCAGGCTGCCAGTTATACGTGCACTTATTGTGGCAAGGTTTTCACTAAAAAGGACTCGTACCGCGAGCACGTCCAGATACACACGGGCCCGCGCCACGCGTGCTCGTACTGCCCCATGCGCTTCGTGCAGCGCTCCAACATGCTGCGTCACGAGCGCAGGCACACAGGCGAGCGCCCCTTCACCTGCCGCCACTGCAGCCGCCAGTTCGCCGACCAGGGCGCCTGCCGCAGCCACGAGAGGACTCACTCAAAAGAGCGCTCTTTCCCGTGTCTATACTGCGGACAGTGCTTCGTGCAGAAGTCGAAGCTGACTTACCACATCCGACGGCATACAGGCCAGGATCTGGAGACCTGCTCGATTTGTTCAAAGCTGTTCACAAGTGCGTGCTCGTTGCGGGAACATATGAAGACCCACAACAAGAGCGAACAAGTGCCTTGCCCGCTGTGCGACCGCAGATATCAGGACTCGCGCTACATGCTGCGGCACCTCCGCACCGCACACAGCCGCGCCGCACACACGTGTCCCGTGGCGCAGTGCGGCAAGCGGCTCACCAGCCAGGTCGGGCTGCGGCAACACGTGCTCACGCACAGCAAGCTAAAACTCTACCAGGTAGGATCAAACTTTACAGAGCGCAGATATCAAGACTCTCGCTCGTGTCCCGTGGCGCAGTGCGGCAAGCGGCTCACCAGCCAGGTCGGGCTGCGGCAACACGTGCTCACGCACAGGCTAAAACTCTACCAGGTAGGATCAAACTTTACAGAGCGCAGATATCAAGACTCTCGCTCGTGTCCCGTGGCGCAGTGCGGCAAGCGGCTCACCAGCCAGGTCGGGCTGCGGCAACACGTGCTCACGCACAGCAAGCTAAAACTCTACCAGGTAGGATCAAACTTCACAGAGCGCAGATATCAAGACTCTCGCTCGTGTCCCGTGGCGCAGTGCGGCAAGCGGCTCACCAGCCAGGTCGGGCTGCGGCAACACGTGCTCACGCACAGCAAGCTAAAACTCTACCAGTGTAAGAGCTGCCCGAAAGCGTTCGCCTGCAAACGGTCAATGTACACACATTTACGCGGCCGCCACCACATCAACATCAACTTTGGAGAACGCAACATACGCGAATACTGCACCACGTTAGATGCAAGAGAATGTGAGCTGGGCCTCAGCGAAGAAACTCTGACCAAAGTCTTCGGACCGCCGAAGTCCGCCACAGATGTCTTGCTAAAACAAGGAATCAGCTTGATGGACCAACCTGTGACTAGCCGAACACCTGAAAGTGAAGAGGCTTCGAGGAGTGGAGAGGTGAGCGATAATTCTGTTGAGAAAGAGAATATAAAGAAGGAGCCAGAGAGTGACGGGGAACTGGAACCGACAGATTTTGTAACGGTCAAGATTGAACCGATTGGAGATGATAATGAGACAGAAGCCTCAGCTCGGGTAGCGCATTTAACCGGAAGAGACGGGCACGCTCTGCTGTTCTCTAATGGTAATGAGATGTCTGAACTTTTCGTTGGTTGGAAGCGAACGTTGGCCGCTGACAAAATCAGGGTAAGGATCGGAGAGATATGTTGTCTATGA
- Protein Sequence
- MASSESDDEPLAALAAIKKLNPSEFGNYYPETTSSAKPPKHREKKRRLPLTIEIKTVSKNLSPTVIERPDDVWLYLKDFNQAGPYSCLLCSEWFINRSKIIVHYVLTHKKDFCGICRYFVPNRESWIEHQKFHVPWQCSQCISNFDTEAELRAHFSTVHKLVHCRLCCFRIPDNDQYNRHLYERHNVTNVSNKNEPTLWELEYEGCPKFLCLLCSKSNNLSTNYFNHYMCHHRITLKCFASLISGTDPPFSITGACISTEFLESQLKQQPNYGYMDIELKPPADIIDNPEKSKTITNFTTLIPEVKQECMSDQENELSGNETISTYIKSEKRHYPPLPDDGPWNTYKGDEDFDITSTELFLLQQCYFEYMNNTFCDINSNIMPKNSEIVYDIHKYDIIKDIDCPICEVNHKTVSEFNSHITKMHGVKIIPSYSCRVCAANFDTQSELCNHVTEELKDFEDLWICQFCDQEFDTREATRRHLTEHWSSIEMDNCFSPHLGFKCKYCPTLFWNEIDRETHQNRVHFPMHKEDYYRCEPCGDIFSDKIWFTYHYIQNHYQHDEEATNPSFLFKCSLCCTVLNNVETMRRHFADKHGEARKIFCSFDNCKHKPFAQRKSFKIHLKVMHNPLARPPGTVRCGACSREFSTARAAAAHAALAHGAARFKCKLCERALATQDERKLHYLLSHPGRHPFECSVCGKSFPYKSSLYTHRAEHKNTQAASYTCTYCGKVFTKKDSYREHVQIHTGPRHACSYCPMRFVQRSNMLRHERRHTGERPFTCRHCSRQFADQGACRSHERTHSKERSFPCLYCGQCFVQKSKLTYHIRRHTGQDLETCSICSKLFTSACSLREHMKTHNKSEQVPCPLCDRRYQDSRYMLRHLRTAHSRAAHTCPVAQCGKRLTSQVGLRQHVLTHSKLKLYQVGSNFTERRYQDSRSCPVAQCGKRLTSQVGLRQHVLTHRLKLYQVGSNFTERRYQDSRSCPVAQCGKRLTSQVGLRQHVLTHSKLKLYQVGSNFTERRYQDSRSCPVAQCGKRLTSQVGLRQHVLTHSKLKLYQCKSCPKAFACKRSMYTHLRGRHHININFGERNIREYCTTLDARECELGLSEETLTKVFGPPKSATDVLLKQGISLMDQPVTSRTPESEEASRSGEVSDNSVEKENIKKEPESDGELEPTDFVTVKIEPIGDDNETEASARVAHLTGRDGHALLFSNGNEMSELFVGWKRTLAADKIRVRIGEICCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -