Agoe027122.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463811.1:4746343-4749378[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.026 6.9 10.1 0.1 3 23 50 71 48 71 0.93 2 19 2.5 6.5e+02 3.9 0.0 2 23 102 126 101 126 0.89 3 19 0.038 10 9.6 0.4 1 23 148 170 148 170 0.91 4 19 0.027 7.1 10.1 1.7 3 23 176 197 175 197 0.91 5 19 0.33 86 6.6 3.2 1 21 203 223 203 224 0.90 6 19 0.062 16 8.9 0.1 1 21 231 251 231 254 0.90 7 19 0.006 1.6 12.1 0.6 1 23 261 284 261 284 0.92 8 19 0.0027 0.71 13.2 3.7 2 23 289 310 288 310 0.95 9 19 1.1e-05 0.0028 20.8 0.2 1 23 316 338 316 338 0.98 10 19 0.055 15 9.1 0.1 3 23 405 426 403 426 0.90 11 19 0.0024 0.63 13.4 0.2 2 23 455 479 454 479 0.94 12 19 0.19 49 7.4 0.5 1 23 501 523 501 523 0.90 13 19 0.011 3 11.2 4.0 1 23 527 550 527 550 0.94 14 19 1.5 3.9e+02 4.6 0.5 1 21 556 576 556 577 0.93 15 19 0.94 2.4e+02 5.2 0.0 1 10 584 593 584 607 0.83 16 19 0.0014 0.36 14.1 0.9 1 23 614 637 614 637 0.96 17 19 5.5e-05 0.014 18.5 2.3 1 20 641 660 641 663 0.95 18 19 7e-06 0.0018 21.3 1.8 1 23 669 691 669 691 0.98 19 19 0.0016 0.41 14.0 3.8 3 23 699 719 698 720 0.95
Sequence Information
- Coding Sequence
- ATGGTATTCCCTAAATCAAATGAGTACAGCAGTTCCGTGAAAGTTCCGGGGCAGCTCCTGGAGACAGCAGAAGAAAATACCAAGATATTGTTGAGACATTCAACTGCTTACCCGGTCCACGTTGCTCGAAGCGGCGATGGGATCATATGCGTCTTTTGTAACGAAACATTCCAGGAGCCGATTTTGTTACGACGCCATATCGACATAAGGCACAGGGGAGAGGACAGATCCTTCGCGTTTACGCAAGGCAATGAGTGGAATAGCGGCGAACCGCGGATAATACGTGCTGATATTACTGCTTTACAATGCAGCAACATCAGTTGCGCTGAAGAGTTTGACTCTCTCGCAGCATTGTCCAAACATCTAATCGAAACACACGGGCTCCCCTACGATCCGGACGTTGATCCGTACATTGTGCCGGTTCTACTGCAGAAAGACAAGTACCCTTGCATCGTTTGCGACAAGAATTGCTCTACCTTAAGAGAACTGTGGAAACATGCCGGCTCACATGTGCAGCGCAACATTTGTGACATTTGCGCCAAATGCTTCCAAACCCAAACCGGCCTTAGGTTGCACGTGTTTAATAAGCACAATGAGGAGTATCGACACTACTGCCATTACTGCAAAACTAACTTCTCCACTGACGAGGAGAAGAATTTGCATAAGCGGATTAGCATGCGCTGCAGGCCCTATCCGTGTCGTTtgtgcgatgagcgcttccttGTATGGGAATACCTTCAGAAACACTTGGTCGATGCTCACGGACAGGCAAAGAAGGTGTTCCCCTGTGGCGAGTGCGGCAAAGTATTTGAAAGGCGGGTCGCCAAGTACCTGCATTTCAAAAAGAACCACACGCCAGATCTGAAATGTCCGCATTGCGATACGACTTTCTCTGGAAGGCGTGAGTTCCAGTTACACGTATCACATCACACGGGCGAGAAACCTTACAAGTGTGAATTATGTGGCAAGACATTCGCACTTGAGCAGTGGCTTAAACGGCACCTGATAGTGCACGACGACAAACTGAAGAAGGCCTGTCCCATCTGCCCGCGGCTCTTTCTTTGCAACAATAGGTTAAATGGGCATATCagtaaacatcatccggattaTAAAAGGACGGGCTCCGACACCGCAATGGAAAACACCATGATAACGTTAAAACATTCGACCGCGTATCCGTTCAGGTTGGCGGTCGAGCGCAAACTGATTGCTTGCGCTTTCTGTGACGGAACGTTCGAGGACCCGACTGAGTTTAGACGCCACGTAGACCTGCTACACAAAGGCATCGACCGGTCGAATGCGGTCATGCTGGTCAAGAGAAGCGGCACAGACCAGTCCGTGCGTGTCGATATCACCGACTTACAGTGCAACGCTCTGACGTGCGTCAAAATATTCAGTAACCTCACGAGCTTGGCGAAACATTTACGCGACGAACACCGCCTCCCCATCGAGCCTGACACACACCCCTTGCTGGTACCGATGCGACTCCAAAAAGACAAATACAGCTGCATAACTTGCGACAAGAAGTTCACCGGCATAAACGAGCTGTCGCGACACTCGGGCTCTCACTACCAGCGGCACATGTGCGAGACTTGCGGCAAGTGCACCACCACGCTCCGTAGCCTGCTAGAACACGTCACTCGCTACCACACCGAGGGGGCTCGGCATTACTGCAGGCGCTGCAAAAATGTGTTCCCAACAGCCGACGCCAAGAAGCTGCACGTGAGAGAGAGCAAAATGTGCCAACCGTTTTCATGTCCCGACTGCCCCGAGCGCTTCCTCATGTGGGAGGCACGCGGCGAGCACATGGTCAACGCTCACGGACGAGCCAGAAAAACCTTCCCCTGCACCGAATGCGGCAGAGTGTTTCCAAAGCGAACCTTGTACTATTTGCATTTCAAGAAGGCGCACACTCAAGAGCACAAGTGCTCGCATTGCGGCGAGACCTTCTCAACACGACGCGACCTCACCGACCACTTACCCGACCACACTGGGCAGCGGCCTTTCAAGTGTTCAGTCTGCGATAAAACGTTCGCTCGCTCGAAGAGCTACCGCAACCACACAATCATCCACGACGACGCGAAGAAGCGGGCCTGTCCGGACTGTCACAAGCTGTTCGTCAGCTCGAGTCGACTCAAATACCATGTCAAGAAACATCACCCGGAGATTTGTGATCAGCAGTTCTCTTAG
- Protein Sequence
- MVFPKSNEYSSSVKVPGQLLETAEENTKILLRHSTAYPVHVARSGDGIICVFCNETFQEPILLRRHIDIRHRGEDRSFAFTQGNEWNSGEPRIIRADITALQCSNISCAEEFDSLAALSKHLIETHGLPYDPDVDPYIVPVLLQKDKYPCIVCDKNCSTLRELWKHAGSHVQRNICDICAKCFQTQTGLRLHVFNKHNEEYRHYCHYCKTNFSTDEEKNLHKRISMRCRPYPCRLCDERFLVWEYLQKHLVDAHGQAKKVFPCGECGKVFERRVAKYLHFKKNHTPDLKCPHCDTTFSGRREFQLHVSHHTGEKPYKCELCGKTFALEQWLKRHLIVHDDKLKKACPICPRLFLCNNRLNGHISKHHPDYKRTGSDTAMENTMITLKHSTAYPFRLAVERKLIACAFCDGTFEDPTEFRRHVDLLHKGIDRSNAVMLVKRSGTDQSVRVDITDLQCNALTCVKIFSNLTSLAKHLRDEHRLPIEPDTHPLLVPMRLQKDKYSCITCDKKFTGINELSRHSGSHYQRHMCETCGKCTTTLRSLLEHVTRYHTEGARHYCRRCKNVFPTADAKKLHVRESKMCQPFSCPDCPERFLMWEARGEHMVNAHGRARKTFPCTECGRVFPKRTLYYLHFKKAHTQEHKCSHCGETFSTRRDLTDHLPDHTGQRPFKCSVCDKTFARSKSYRNHTIIHDDAKKRACPDCHKLFVSSSRLKYHVKKHHPEICDQQFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -