Agoe105835.3
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463832.1:4376609-4416948[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.002 0.52 13.6 1.3 1 23 9 31 9 32 0.95 2 15 5.6 1.5e+03 2.8 0.3 1 21 35 55 35 56 0.92 3 15 0.0011 0.3 14.4 0.9 2 21 72 91 72 92 0.93 4 15 0.12 32 8.0 5.5 1 23 96 118 96 119 0.95 5 15 4.5e-05 0.012 18.8 0.6 2 23 126 147 125 147 0.97 6 15 0.34 88 6.6 0.3 1 19 156 174 156 177 0.94 7 15 0.0043 1.1 12.6 1.1 2 23 190 212 190 212 0.94 8 15 0.00015 0.038 17.2 1.6 1 23 218 241 218 241 0.95 9 15 0.23 61 7.1 0.1 3 12 252 261 251 266 0.88 10 15 0.0002 0.051 16.8 0.9 3 23 285 305 284 305 0.98 11 15 0.0058 1.5 12.2 0.9 1 23 311 334 311 334 0.94 12 15 0.04 10 9.5 1.1 1 22 542 563 542 565 0.89 13 15 6.5e-05 0.017 18.3 0.2 1 23 571 594 571 594 0.95 14 15 8.9e-05 0.023 17.9 0.2 1 23 602 624 602 624 0.97 15 15 1.5e-05 0.0039 20.3 0.3 1 23 630 653 630 653 0.93
Sequence Information
- Coding Sequence
- atgaataaggcgTCCGCCGGCACGTACATCTGCGACATGTGTCAACAACGATTCCACGATCAGCCGGCACTACAGCAGCACATAGAATGGCACCACACACTTTACAAGTGTCGAGTGTGCGAATATGAGACTCGCGAGTTGGttgacatacaggcacataagaGGCACATACTAGCCGTTGATGAAAGTGGGGGGAAGAAGAAATGTGCCAATGAATGCAAGAAGTGTAAAATTACTTTTGAgaCTGCCTCGCTGTTGCGCAAGCACCGCTCCAAGTGCAATCTCTTCAAGTGTGACTTTTGCGAGAAAGCATTCGTTCATCGCACCTCGAAATACTCGCACATGGATCTCCATCACAAGCCGCTGCCGCAGGTGGAGTGCAAGCTGTGCGGCAAGCCGTTCAAGAACAAGTACGCGATCAAGTCCCACCTGCAGAAACACCGCAAGGAGGCGAGGGGCGGCAACTACACGTGCTCTATATGCGAGGTCGACTACAAGACGGCGATTGCGTTCCGGCAACACTTCTACAAGACCGTCCGGATCGACGGCCGCGAGGAGTTCAGGAACGAGTGCACGCATTGCGAGATAAAGTTCTCGTCTCCGAAGCGCCTGCAGGAACACATTAGCAATGTGCACGCGAAGAAGGCTACCTACAGATGCGACAAGTGCCACAAGTCATACATGCAACAGAAGGCGTTGGAGGCGCACATAGCGAACAAGCACCAGACCAGCAAGCCTGCGCGGGATAAAATATGTGACGTGTGCGGGAAACGGTTCACCCGCATGGCGCAAGCAAGCAAGGTGCACATAGCGAACAAACACCAGACCAGCAAGCCTGCGCGGGACAAGATATGTGACGTGTGCGGGAAACGGTTCACCTCGACGACGATCCTGCGCAACCACATGCGCTCTCACACCGGGGAGAAGCCCTACAAGTGCACCCTGTGCGGCGCAGCCTTCGCGCACACCGGCAGTCTGTACACGCACAACAAGTTGCTGCACAAGAAGAGGAAGATGCAGCACGCACACGTCGACATGCAGATTCTGTACACGCACAACAAGTTGCTGCACAAGAAGAGGAAGATGCAGCACGCACACGTCGACATGCAGATGTATgtattgtgtgtatatgtgtgtgtaggCAGTCTGTACACGCACAACAAGTTGCTGCACAAGAAGAGGAAGATGCAGCACGCACACGTCGACATGCAGATGTATgtattgtgtgtatatgtgtgtgtaggCAGTCTGTACACGCACAACAAGTTGCTGCACAAGAAGAGGAAGATGCAGCACGCACACGTCGACATGCAGATGTATgtattgtgtgtatatgtgtgtgtaggCAGTCTGTACACGCACAACAAGTTGCTGCACAAGAAGAGGAAGATGCAGCACGCACACGTCGACATGCAGATGTATgtattgtgtgtatatgtgtgtgtaggCAGTCTGTACACGCACAACAAGTTGCTGCACAAGAAGAGGAAGATGCAGCACGCACACGTCGACATGCAGATGTATgtattgtgtgtatatgtgtgtgtaggCAGTCTGTACACGCACAACAAGTTGCTGCACAAGAAGAGGAAGATGCAGCACGCACACGTCGACATGCAGATGTACCAGTGTACGGAGTGCAGCAAGGAGTTCGTGTCCGAAGCGAGGTGGCGCAGCCACTACGACTTCTTCCACCTCAAGAAGTCGAAGTACGCCTGCGAGATCTGTAACAAGATATTCATCTCGGCGTGGAACCTCAAGAACCACAAGACGATGCTCCACGGCATCAACCGCACGCGCAGCTTCCCGTGCAACATATGCGGGAAGGAGTTCTTTAGAATCGACGCACTCAAATCGCATAAGCTGATCCACTCCGAGGAGCGGACCTTCATGTGCCCTGTGTGCGGCAAGACATTCAAGCAACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTAAGATACAAGCAGCGCTCTACACGCACAACAAGCTCATGCACAAAGGTAAGGTACAAGCAGCGCTCTACACGCACAACAAGCTCATGCACAAAGGTAAGGTACAAGCAGCGCTCTACACGCACAACAAACTCGTGCCCAAAGGTAAGGTACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTAAGATACAAGCAGCGCTCTACACACACAACAAGCTCATGCACAAAGGTAAGGTACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTAAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACATGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACATGCTCGTGCACAAAGGTAAGGTACAAGCAGCGCTCTACACGCACAACAAACTCGTGCCCAAAGGTAAGGTACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTAAGATACAAGCAGCGCTCTACACACACAACAAGCTCATGCACAAAGGTAAGGTACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTAAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACATGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACATGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTAAGGTACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCTCAACAATCTCGTGCACAAAGGTAAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTAAGGGACAAGCAGCGCTCTACACGCACATCATGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACATGCTCGTGCACAAAGGTAAGGTACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTAAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTAAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACATGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCTCAACAATCTCGTGCACAAAGGTAAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTAAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACAAGCTCGTGCACAAAGGTGAGGGACAAGCAGCGCTCTACACGCACAACAAGCTcgtgaaaaaataa
- Protein Sequence
- MNKASAGTYICDMCQQRFHDQPALQQHIEWHHTLYKCRVCEYETRELVDIQAHKRHILAVDESGGKKKCANECKKCKITFETASLLRKHRSKCNLFKCDFCEKAFVHRTSKYSHMDLHHKPLPQVECKLCGKPFKNKYAIKSHLQKHRKEARGGNYTCSICEVDYKTAIAFRQHFYKTVRIDGREEFRNECTHCEIKFSSPKRLQEHISNVHAKKATYRCDKCHKSYMQQKALEAHIANKHQTSKPARDKICDVCGKRFTRMAQASKVHIANKHQTSKPARDKICDVCGKRFTSTTILRNHMRSHTGEKPYKCTLCGAAFAHTGSLYTHNKLLHKKRKMQHAHVDMQILYTHNKLLHKKRKMQHAHVDMQMYVLCVYVCVGSLYTHNKLLHKKRKMQHAHVDMQMYVLCVYVCVGSLYTHNKLLHKKRKMQHAHVDMQMYVLCVYVCVGSLYTHNKLLHKKRKMQHAHVDMQMYVLCVYVCVGSLYTHNKLLHKKRKMQHAHVDMQMYVLCVYVCVGSLYTHNKLLHKKRKMQHAHVDMQMYQCTECSKEFVSEARWRSHYDFFHLKKSKYACEICNKIFISAWNLKNHKTMLHGINRTRSFPCNICGKEFFRIDALKSHKLIHSEERTFMCPVCGKTFKQQAALYTHNKLVHKGKIQAALYTHNKLMHKGKVQAALYTHNKLMHKGKVQAALYTHNKLVPKGKVQAALYTHNKLVHKGKIQAALYTHNKLMHKGKVQAALYTHNKLVHKGKGQAALYTHNKLVHKGEGQAALYTHNKLVHKGEGQAALYTHNKLVHKGEGQAALYTHNMLVHKGEGQAALYTHNMLVHKGKVQAALYTHNKLVPKGKVQAALYTHNKLVHKGKIQAALYTHNKLMHKGKVQAALYTHNKLVHKGKGQAALYTHNKLVHKGEGQAALYTHNKLVHKGEGQAALYTHNMLVHKGEGQAALYTHNMLVHKGEGQAALYTHNKLVHKGEGQAALYTHNKLVHKGKVQAALYTHNKLVHKGEGQAALYTHNKLVHKGEGQAALYTLNNLVHKGKGQAALYTHNKLVHKGKGQAALYTHIMLVHKGEGQAALYTHNMLVHKGKVQAALYTHNKLVHKGKGQAALYTHNKLVHKGKGQAALYTHNKLVHKGEGQAALYTHNKLVHKGEGQAALYTHNMLVHKGEGQAALYTHNKLVHKGEGQAALYTHNKLVHKGEGQAALYTHNKLVHKGEGQAALYTLNNLVHKGKGQAALYTHNKLVHKGKGQAALYTHNKLVHKGEGQAALYTHNKLVHKGEGQAALYTHNKLVHKGEGQAALYTHNKLVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -