Agoe053027.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463816.1:37053553-37058777[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0056 1.5 12.2 1.2 1 23 73 95 73 95 0.98 2 15 0.0017 0.46 13.8 2.6 1 23 101 123 101 123 0.98 3 15 0.19 51 7.4 0.5 2 21 129 148 128 149 0.81 4 15 1.2e-05 0.0032 20.6 3.6 2 23 254 275 253 275 0.97 5 15 0.0019 0.5 13.7 3.5 1 23 281 303 281 303 0.98 6 15 7.8 2e+03 2.3 2.3 1 12 309 320 309 325 0.78 7 15 3.8e-05 0.0099 19.0 2.3 2 23 330 351 329 351 0.96 8 15 0.0016 0.43 13.9 1.7 1 23 354 377 354 377 0.97 9 15 0.00019 0.05 16.8 0.9 1 23 379 401 379 401 0.98 10 15 2.5e-05 0.0066 19.6 1.7 2 23 405 426 404 426 0.97 11 15 0.00031 0.082 16.2 0.3 2 23 432 453 431 453 0.95 12 15 8.5e-05 0.022 17.9 2.5 1 23 459 481 459 481 0.99 13 15 0.027 7.1 10.0 4.1 1 23 493 516 493 516 0.98 14 15 2.2e-05 0.0057 19.8 0.5 1 23 540 562 540 562 0.98 15 15 0.0021 0.54 13.6 2.1 1 23 568 590 568 590 0.97
Sequence Information
- Coding Sequence
- ATGGTGTTGCGAAGTGCGAAGACAGCACCTTCTGATGTAATCTCACTGCTAGATTCAGCTTTGGACGTCATTAAATATTTGGATCAAGCCAATGAGAATCTGTTCAGTGATAGTAAGGGTAAACCTACTGCAAGCTTGGACCCTAATGGCTGGGCCCTATTGCGGAGTCTCAACAAGAAATTGATTCATCATGAAATTTATAACCaggagaaaccctttcagtgcgAGACTTGCCAGGAGCTGTTCACGGAGGATGCGCACCTCATCACACATAGACGAGAACATTGCGATGGCGACAAGCACAAGTGCAGTGTCTGCCAAATAGCATTTTTCACAAAGAAATTGCTCAAGGAACATGAGTCCACACACAATTGTGCCAAGCTGAAATGTGAGTTCTGTGGGAAGACCTTTCTATTTAAGCAGAATATCGATACGCATCTGAAGATCTGTAATAAACCTAGTGATGTTGTCAAGAGAGAAATTTCAACTGAAACTAAATCAAATGAGAGACTTCTTACTAAAACTAGAAGTATCCGCTTCAAGTCTAGCGGAAAAGAAACTGTTGCCACGAAACGCCAAAGAAATCAGAAGAGGATTATTTCTCACTTTGAAAGAGATAAACGTAAGAGAACGCGTGCCGTCAAATCTGTCCCCGCACGTCCTGAACATAGCGGCACGACTACGGGAAGCAGTTTATCCGGTCACGAGAACACTGGCGAAAATATTATACGACACAGAAAACCTCGTGATAAACGATCAGAGTGCGATCTGTGTGACAAAACCTATGCACACAAACGCAGTCTCACTAAACACAGAAGAACACACGAAACAAGAATACGTTTCCAATGCAAGCTGTGTGATAAAAGTTACACTTGCAAACAAAGTCTCTCAAGGCACTTAGCAATCCATGAAACGAGTAAAGGCTTTCAGTGTGATCTGTGTAAAAAGAGTCTCATAAGACACTTAAAGGAGCACGATAATATATTAGAATGCAATGTCTGTAAAAAAACCTACGCCTTCAAAAGTGATCTCAGGAAACACAAACAAAAGCACGGAAGGTATAAATGCGATTTGTGTAATGTTACCTACATTCGCAAACGATACCTCGCGTACCATAAGAGGTTATCGCACGATTATCCTTGCAATGTGTGTGACCTCAGCTTCGTCACTGTACACGCCCTCAGTAAACATACAAGCAAACACGACAAAGTCCGGTGCGACGTGTGCTCTAAAACGTACACTCGCAGGCGCGCGCTCGAGACGCACAGGAGGAGACACGAGAGAGTTCATCTCCAGTGCGACGTCTGCAGCAAAGTGTACGCTCGGAGACATGGCCTCGTGAAACACCTGATAGCACACATACATGGAAGCGAGTTCCAGTGCAACTTGTGTGGCGCCGTGCGCACGCGCAGGTGCGACTTGAACCAACACATGAAGACTCACGAGAGGAGATCGCACACGCGGCGACCACACGAGTACCGGTGCGACAGTTGCGCGCGCATCTTCCACAGCAGAGATTGCCTCGTCAAGCACCTCAAGCGCGGCCACCTGAGAGCGAGCTCCGACCGGCGGCGGAGCGCAGCCGGCGCGGGCGCAGGCGCGGGCGCGGACGCGGGGTACGAGTGCTACGTGTGCGGGAAGCGGCTGCGCTCGGCCGCGACACTCAACACGCACATGTACACGCACGTGGCGATGAAGGAGTTCGCCTGTTCCTTCTGCGGGAAGCGCTTCCTCAAGCGCACCAACCTGCTGCAGCATGAGAAGACGCACATGACGCGACGCGAGGAGACCAGCATGCGAGGGTACGAGGAGACCAGCATGCAAGGGTACGAGGAGACCAGCATGCGAGGGTACGAGGAGATGGGACTGGCAGcggagccgccgccgccggtcgTGACGCTATTCGAGAAGCACATTGCCTTTGCGGATATGTAA
- Protein Sequence
- MVLRSAKTAPSDVISLLDSALDVIKYLDQANENLFSDSKGKPTASLDPNGWALLRSLNKKLIHHEIYNQEKPFQCETCQELFTEDAHLITHRREHCDGDKHKCSVCQIAFFTKKLLKEHESTHNCAKLKCEFCGKTFLFKQNIDTHLKICNKPSDVVKREISTETKSNERLLTKTRSIRFKSSGKETVATKRQRNQKRIISHFERDKRKRTRAVKSVPARPEHSGTTTGSSLSGHENTGENIIRHRKPRDKRSECDLCDKTYAHKRSLTKHRRTHETRIRFQCKLCDKSYTCKQSLSRHLAIHETSKGFQCDLCKKSLIRHLKEHDNILECNVCKKTYAFKSDLRKHKQKHGRYKCDLCNVTYIRKRYLAYHKRLSHDYPCNVCDLSFVTVHALSKHTSKHDKVRCDVCSKTYTRRRALETHRRRHERVHLQCDVCSKVYARRHGLVKHLIAHIHGSEFQCNLCGAVRTRRCDLNQHMKTHERRSHTRRPHEYRCDSCARIFHSRDCLVKHLKRGHLRASSDRRRSAAGAGAGAGADAGYECYVCGKRLRSAATLNTHMYTHVAMKEFACSFCGKRFLKRTNLLQHEKTHMTRREETSMRGYEETSMQGYEETSMRGYEEMGLAAEPPPPVVTLFEKHIAFADM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -