Agoe079772.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- RTase_3
- Assembly
- GCA_949825045.1
- Location
- OX463824.1:863725-872289[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 2.7 7e+02 3.8 4.4 1 21 462 482 462 484 0.94 2 24 0.011 3 11.2 1.0 1 23 493 516 493 516 0.94 3 24 0.38 1e+02 6.4 1.6 2 23 527 549 526 549 0.94 4 24 2.7e-05 0.0071 19.5 3.4 2 23 572 593 572 593 0.97 5 24 0.00034 0.09 16.0 3.8 1 23 599 622 599 622 0.92 6 24 4.3e-05 0.011 18.9 1.6 1 23 656 678 656 678 0.98 7 24 9.7 2.5e+03 2.0 1.4 1 10 684 693 684 700 0.86 8 24 0.65 1.7e+02 5.7 3.4 1 23 843 865 843 865 0.95 9 24 0.00069 0.18 15.1 3.5 2 23 872 894 871 894 0.94 10 24 2.2e-06 0.00058 22.9 1.3 1 23 900 922 900 922 0.96 11 24 1.5e-05 0.004 20.3 1.8 1 23 928 950 928 950 0.98 12 24 0.00057 0.15 15.3 0.4 1 23 956 978 956 978 0.97 13 24 0.026 6.8 10.1 3.8 5 23 987 1005 984 1005 0.95 14 24 0.00093 0.24 14.7 4.7 1 23 1011 1034 1011 1034 0.97 15 24 0.019 4.9 10.6 0.0 3 21 1102 1120 1100 1121 0.93 16 24 0.0022 0.57 13.5 0.3 1 23 1130 1154 1130 1154 0.94 17 24 0.02 5.3 10.4 0.7 2 23 1161 1182 1160 1182 0.97 18 24 0.45 1.2e+02 6.2 0.0 1 23 1231 1252 1231 1252 0.95 19 24 0.0042 1.1 12.6 0.7 2 23 1431 1453 1431 1453 0.95 20 24 0.0061 1.6 12.1 0.1 1 23 1459 1481 1459 1481 0.96 21 24 1.1e-05 0.0029 20.7 1.4 1 23 1487 1509 1487 1509 0.97 22 24 0.0018 0.47 13.8 0.7 2 23 1516 1537 1515 1537 0.97 23 24 5.2e-05 0.014 18.6 1.3 1 23 1543 1565 1543 1565 0.98 24 24 0.0015 0.39 14.0 1.0 1 23 1570 1593 1570 1593 0.96
Sequence Information
- Coding Sequence
- ATGACTAAAGCTTACGATAAAGTGCAATACAAAATATtgctagataaattatatggtgTAGGAATCCGCGGAATTGCTCATAAATGGTTCACATCTTACTTACACAATAGAGAACAGTTGGTTGAAATAGAATTTTTTAACCACCAGACAAGCGAAATTCAGAATATTCGCTCAAAGAACACTAGTATACACGCATCCATTCCCCAAGGTAGTGTAATAGGATGCCTCCTATTCCTAATCTACATCAACGACCTACCAAAGATCATAGATAAAAAGAAATGCGTCTTATTTGCCGACGACATTTCCCTACTTACGTCATGCTACAATGAAATTGATCTGAATGGAAAGCTATTCCCCATTCtaaataaaactgtaaattGGCTTAGTGATCACAACCTCGAAATtaactataaaaaaacaaaattaatgttgtTCCACCCATACCAGAAATCTCCTATCAATATTAAcctgacatataataatattgaacttgaaactgtaaataattttaaccTACTAGGCCTAACAATAGATACACATATAGACTGGAAAATTCATATAACAAAGATTAGAGCTAAACTTTCAAAATTCGCCTATGCATTACGAGTAATAAAAACTACTACAGATCTAAAAACTGCAATTACTGTATACTATGCCTACGGGCATGCATGGTTAAACTATGGCATAATCCTTTGGGGAAACAGTACAAATGCTCCTTCTATCTTTACTCTGCAAAAACGTCTAATCCGAATTTTGGTATCTAGTTGCGACTCGCTCCCACAAGCCGTCTGCTACCAGTGCGCCAGCACTCTCCTGGCCTGGCACGAGCTGGTGGCGTGCTGCGTGCAGGCAGACGCCGCTCTGCGCACGCGCGCCAGGCtgaacgccgccgccgccgccgccgccaccgccaccaCTGCCACCGCCGTAGTCTCTGACAATGGTCCAGCGCAGAACTTTGAGTTACCACCAAGCAACAATGTTCATGAGAGTGCGGCAACAGAGACTCAACAACACCtagaacaacaaaaagaacAACCGATCAAGTCAGAACACGCACTACACTTTTACAAACTAGTCCGGAAGGTGTTGGTCGACTCCTTCCGTGTCTTAAACTCAAGAGAACAAGAACTAGACTTTGAATTTGTTTGCCAAAAATGCGACCAAATGAAACTGAGAACCGTGGGCGGCCTAGCCGAGCATTTGCTAGAGGTACACGAACATTTTGACTTGAAAAAGTCGATAACATCATTCATAGAAGAAAATATAACATTTGAAGAGATACTCATACTCAGTAGCACCGAAGAGGAAGATAATGAAAACCGTCTGGAAGATGCAGCAGAATCTGCAGATGATATCATACCTGAGCTTGCAACAACAAATTATTTCTGTCCGTTTTGTGATAGCATCTTCTCGTCTTGTACTCGTCTGATCTGGCACCTCAACTGTCACGTGGACTCGTGCATCGAGGAAGGATTCCTCTGCAGGATCTGCGAACAAAGCTTCTCGGAGAAGAAGACCTTTGTGCAACACTTGCAGGTGACGCATGTCTTCCGAGCAGCAGACAAAACGGAGCTGACCTGTCGCTCCTGTGGCCACACAGCCACAGACTACAACCACCTATACGCCCACATCGATAAGGCACACCCTGATGAAAAATACGTAACTAAATCTCAAACTCACTCCAGCAAGGACCAGAAATACATCCCGGCGTCGTGTCCAGAGTGTCAGAAGTCGTTCTGCAATAAATACAACATGCAGATTCACCTGAAATCACACTTTTTCGATGGCTCTTATAAGTGCGATAGATGTTCGAAATGTTACAAGTCCCAAGCGAACTTGAGGAAGCATTCCCTGCTGGTGCACGAAGGCAGGCTGGAGCACGCTTGCCGCGCATGTGGCGAGAAGTTTGGGACGAGAACCGCGCGCGACATACACTCGCGGCTGCACACTGGAGAGAGACCTTACACGTGCACGACCTGCGACAAGCGCTTCCGAGCCAAGAATACGCTCGAGCGACACGTCGAGACGCACCTCGACATACGCAAATACGAGTGCCACGTCTGCCCGAAAAAGTCGGAAACCTGCGGAGTTGCTTTTGAGACATATCGGTCGGCGGTCGCGGCTATGTCGGCGAAACGGCTCGCTAGACTGCGGCCCGAAGACGAATCCACTCAGTCCGGCAACGAAAACGAAGAACACGTCAGTGACGATACAGACACGGATGATGACCCTCTAGCTACTCTGGCTCGGCGGAAGCACGCTGGACTATACGACAACTTCTACACGGCGTTAGTCAATTTCCGGAACCATTATGTAGACGAACACGAGAGCAAAACGCGCTCCTATCCCGAGTTCACAGAATCTAGCGAGTCCGAAACTGTCCAAAACGAACACAACGAAGAATTTATGGACGCCGACAGGTTTGACGATCTCACCGAGTCCAACATGCGGAAAGACCGGATGGACGACGAGACGAAGCGAGAACTCGACGAGGTGCAAACGAAAATCAACGGCAAACTGTTCTTCGCGTGCAAGATCTGCGGCAAAAACCTGAGTTCCACGCACACATATGTGTTCCACAAGAGAACTCACACAGGGGACAAGCCCTGCGTGTGTCACGTCTGCGGGAAACAGTTCACGGCACCGAGCGGCCTGCACCGGCATCTCAATGAGACTCACGAGCGGATACGACGCCACTTCTGCTCTCTATGTGGAAAAGGATTCGCCAACGCGCAGAATTTAAAGCAACATATGAGGATACACACGGGGGAGAAGCCCTTTGTGTGTCCGCATTGCGGGAAGAGATTCGCTCAGGGCGGCACCTTGCATGTGCATCTCAAGACGCATACGGAGGACTTCCCGTTCGACTGCGCGGAGTGCGGGGCCAAGTTTAGACTGCGCTCGGGACTGACGCGGCATACACTGAAGCACAGCGGCGAGCGACCGCACGCCTGCTACTGCGGCAAGCAGTTCCGGCAGAGGCACGAGTTGAACGCGCACAGCCTCAAGCATACCTGCACAGAGCTGCACTCGTGCGACCTCTGCGGCGCCACGTTCGGACAGAAACGGAGCTTGAAGCACCACCGCAGGAAGATGCACGACGGGGCGGGGCAGCCGGAGGCGTATACTCCTCACGTTCAGGCCGTAGCGGCGGAGATCCTTCCCGAAGTCTCCGACAGTAGAGCGCTCCGCTCGCGCGACCGGCGCGCGCTCGTGGCGTGCGGGGCGTGCGGGCGCGCGGTGCaggcgcgttcgagtcggcggCATGCGCGCTCGCACCTGgccgccgcgccgctcgcctGTGCGCGCTGCGACCGCGGCTTCCGCGAGCGCGGCAACCTGGCCCGTCACGAGCGCGCGTGCCgtcgcgccgcgccgcgcccgcaCGTCTGCCCTGAGCCCGCCTGCGACCGCGCCTTCGTGCGCCGCGAGCACCTCGCCGACCACCGAGCCACGCACTCGGACGCGGCGGCGCTCGTGTGCGAGACCTGCGGCGCGCGCTGCAAGTCCGGTGCCGCGCTGCGCATGCACCGTCGCTCGCACGGCGCCGCGTATACGCACAGCTGCAGCGAGTCAGATGTCCCCCCGCCGCCACCACCGCAGCTGTCGTGCCGCTACTGCGGGGCCGCGGCCGTGCACGAGGCGGCGCGGCGCGCGCACCTGGTGGAGGCTCATGCGGAGTCGCTGTTCGAGTGCGAGGAGTGCGGCGAGTACGTCGACATCGGCGAGCTCATCGCGCACATGTCGGGACACGCCGGCGAGATCCGCGACCCgccgcccgccccgcccgccgCGCCCGTCGCGCCCGCCCCGCCCGACCGGACCGAGGGCACCGCGACCACCGACGCGACGCCGAATTCTACTCGACTCGACAACACAGCCCCAGAGGACACGCCGTCCAGGAGGGAATCGTCGACGGAGCCGACGACGCCGTCTTCTGTAAGCACGCCATCAAGAGAGAGCTCGTCCGACACCAGCCCCTCGATCATCGAGACGCCGAAGAAACAGAAGAGACCGAAGGTTGAAGAACTGAAACTCGTCAACATCGATTCGGCCGACGCGGAACATGACCAACCGATCGAACCAAATGAGCGAGATGTCGCCGACACAACGGACGACAACGAGTTCTCCGACCGATCCGACTCGGAGGACGGGTTCGGACCTCTCCCGGATTCAGTCTTCGAAGCGATCGAGGACTCACAGGATGGAGATCCCGACGACTCCACCACCATCGCCCCAGAAAAACCAGAGAAAGGAAACAAGAAAACCAAAGAGAAGCAATCGCGAAGCTGTCCGATATGCTTCAAGGAGTACACGGTGTCGTCGAGCTACTTCTACCACATGAAGTACTCGCACCGCGGCGTCAAGGAGCACGCGTGCGCAGTATGCGGCCGTCGCCTCGCCACTCGCGCGGGCCTGGCGCAGCACCTGCTCACTCACTCCGATCAACTCGCCTACGAGTGCAAGCAGTGCGGGAAGAAGTTCCGCACCAAGGCGAGCCTCTACGTCCACACGCAAGGCCACAAGGGCGACAAGAACTGGTCGTGCGACCAGTGCGGCCGCCGTTTCGTCTGGAGACAACTGTTATTGCGACATATGAAGCGACATTTGGTTGAAAAGAGCCACGTGTGTACCGTTTGCAACCGTGGGTTTAGCGTGCGGTACGATCTGTTGCGGCATGCACGCACGCACACGGCGGGCTGTCACACGTGCGAGAAGTGCGGAGCGGAGTTTGCGCAAGTGCGGTATCTCAAGGTGCACATGGACAAGAAACACAAGGCGGTGTCTCCGGGGAACGGTGTCGCGTCAACGACGTAG
- Protein Sequence
- MTKAYDKVQYKILLDKLYGVGIRGIAHKWFTSYLHNREQLVEIEFFNHQTSEIQNIRSKNTSIHASIPQGSVIGCLLFLIYINDLPKIIDKKKCVLFADDISLLTSCYNEIDLNGKLFPILNKTVNWLSDHNLEINYKKTKLMLFHPYQKSPININLTYNNIELETVNNFNLLGLTIDTHIDWKIHITKIRAKLSKFAYALRVIKTTTDLKTAITVYYAYGHAWLNYGIILWGNSTNAPSIFTLQKRLIRILVSSCDSLPQAVCYQCASTLLAWHELVACCVQADAALRTRARLNAAAAAAATATTATAVVSDNGPAQNFELPPSNNVHESAATETQQHLEQQKEQPIKSEHALHFYKLVRKVLVDSFRVLNSREQELDFEFVCQKCDQMKLRTVGGLAEHLLEVHEHFDLKKSITSFIEENITFEEILILSSTEEEDNENRLEDAAESADDIIPELATTNYFCPFCDSIFSSCTRLIWHLNCHVDSCIEEGFLCRICEQSFSEKKTFVQHLQVTHVFRAADKTELTCRSCGHTATDYNHLYAHIDKAHPDEKYVTKSQTHSSKDQKYIPASCPECQKSFCNKYNMQIHLKSHFFDGSYKCDRCSKCYKSQANLRKHSLLVHEGRLEHACRACGEKFGTRTARDIHSRLHTGERPYTCTTCDKRFRAKNTLERHVETHLDIRKYECHVCPKKSETCGVAFETYRSAVAAMSAKRLARLRPEDESTQSGNENEEHVSDDTDTDDDPLATLARRKHAGLYDNFYTALVNFRNHYVDEHESKTRSYPEFTESSESETVQNEHNEEFMDADRFDDLTESNMRKDRMDDETKRELDEVQTKINGKLFFACKICGKNLSSTHTYVFHKRTHTGDKPCVCHVCGKQFTAPSGLHRHLNETHERIRRHFCSLCGKGFANAQNLKQHMRIHTGEKPFVCPHCGKRFAQGGTLHVHLKTHTEDFPFDCAECGAKFRLRSGLTRHTLKHSGERPHACYCGKQFRQRHELNAHSLKHTCTELHSCDLCGATFGQKRSLKHHRRKMHDGAGQPEAYTPHVQAVAAEILPEVSDSRALRSRDRRALVACGACGRAVQARSSRRHARSHLAAAPLACARCDRGFRERGNLARHERACRRAAPRPHVCPEPACDRAFVRREHLADHRATHSDAAALVCETCGARCKSGAALRMHRRSHGAAYTHSCSESDVPPPPPPQLSCRYCGAAAVHEAARRAHLVEAHAESLFECEECGEYVDIGELIAHMSGHAGEIRDPPPAPPAAPVAPAPPDRTEGTATTDATPNSTRLDNTAPEDTPSRRESSTEPTTPSSVSTPSRESSSDTSPSIIETPKKQKRPKVEELKLVNIDSADAEHDQPIEPNERDVADTTDDNEFSDRSDSEDGFGPLPDSVFEAIEDSQDGDPDDSTTIAPEKPEKGNKKTKEKQSRSCPICFKEYTVSSSYFYHMKYSHRGVKEHACAVCGRRLATRAGLAQHLLTHSDQLAYECKQCGKKFRTKASLYVHTQGHKGDKNWSCDQCGRRFVWRQLLLRHMKRHLVEKSHVCTVCNRGFSVRYDLLRHARTHTAGCHTCEKCGAEFAQVRYLKVHMDKKHKAVSPGNGVASTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -