Agoe106369.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463832.1:8425732-8429399[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.016 4.1 10.8 1.3 3 23 30 50 28 50 0.94 2 18 1.2e-05 0.0031 20.6 0.8 1 21 56 76 56 77 0.95 3 18 1.2e-05 0.0031 20.6 0.8 1 21 100 120 100 121 0.95 4 18 1.2e-05 0.0031 20.6 0.8 1 21 144 164 144 165 0.95 5 18 1.2e-05 0.0031 20.6 0.8 1 21 188 208 188 209 0.95 6 18 1.2e-05 0.0031 20.6 0.8 1 21 232 252 232 253 0.95 7 18 6e-05 0.016 18.4 0.4 2 21 277 296 276 297 0.94 8 18 1.2e-05 0.0031 20.6 0.8 1 21 320 340 320 341 0.95 9 18 1.2e-05 0.0031 20.6 0.8 1 21 364 384 364 385 0.95 10 18 1.2e-05 0.0031 20.6 0.8 1 21 408 428 408 429 0.95 11 18 3.7e-05 0.0097 19.1 0.5 2 21 453 472 452 473 0.94 12 18 1.2e-05 0.0031 20.6 0.8 1 21 496 516 496 517 0.95 13 18 1.2e-05 0.0031 20.6 0.8 1 21 540 560 540 561 0.95 14 18 1.2e-05 0.0031 20.6 0.8 1 21 584 604 584 605 0.95 15 18 1.2e-05 0.0031 20.6 0.8 1 21 639 659 639 660 0.95 16 18 7.2 1.9e+03 2.4 0.3 1 9 683 691 683 692 0.91 17 18 0.00015 0.039 17.1 0.4 1 23 717 740 717 740 0.92 18 18 0.21 55 7.2 4.3 3 23 748 769 747 769 0.94
Sequence Information
- Coding Sequence
- ATGAAGACGTACTCCGCCTACCGCTTCCACTATCAACGCGAGCACCCCAACCTGACGCTCGCTCGGACGAAGCCGTGCGACCATCTCTGCGACGTATGCGGCAAGCAGTTCTCGtgcgcGGCGAACCTCGCGGACCATCAGACGGAGCACTTGGACAGTTGTCTGTTCGAGTGTACCGAGTGCGACAAGCGGTACAAGCGACTCTCCTCGCTGAAGCTGCACCAGAAGGTAAGTACAGTTGAGTGCACAATAGTGAACCTCGCGGACCATCAGACGGAGCACTTGGACCGTTGTCTGTTCGAGTGTACCGAGTGCGACAAGAGATACAAGCGACTCTCCTCGCTGAAGCTGCACCAGAAGGTAAGTACAGTCGAGTGCACAATAGTGAAACTCGCGGACCATCAGACGGAGCACTTGGACAGTTGTCTGTTCGAGTGTACCGAGTGCGACAAGCGGTACAAGCGACTCTCCTCGCTAAAGCTGCACCAAAAGGTAAGTACAGTTGAGTGCACAATAGTGAACCTCGCGGACCATCAGACGGAGCACTTGGACAGTTGTCTGTTCGAGTGTACCGAGTGCGACAAGAGGTACAAGCGACTCTCCTCGCTGAAGTTGCACCAAAAGGTAAGTACAGTTGAGTGCACAATAGTGAACCTCGCGAACCATCAGATGGAGCACTTGGACAGTTGTCTGTTCGAGTGTACCGAGTGCGACAAGCGGTACAAGCGACTCTCCTCGCTGAAGCTGCACCAGAAGGTAAGTACAGTCGAGTGCACAATAGTGAACCTCGCGGACCATCAGACGGAGCTCTCGGACAGTTGTCTGTTAGAGTGTACCGAGTGCGACAAGCGGTACAAGCGACTCTCCTTGCTGAAGCTGCACCAGAAGGTAAGTACAGTCGAGTGCACAATAGTGAAACTCGCGGACCATCAGACGGAGTACTTGGACAGTTGTCTGTTCGAGTGTACCGAGTGCGACAAGCGGTACAAGCGACTCTCCTCGCTAAAGCTGCACCAAAAGGTAAGTACAGTTGAGTGCACAATAGTGAACCTCGCGGACCATCAGACGGAGCACTTGGACAGTTGTCTGTTCGAGTGTACCGAGTGCGACAAGAGGTACAAGCGACTCTCCTCGCTGAAGTTGCACCAAAAGGTAAGTACAGTTGAGTGCACAATAGTGAACCTCGCGAACCATCAGATGGAGCACTTGGACAGTTGTCTGTTCGAGTGTACCGAGTGCGACAAGCGGTACAAGCGACTCTCCTCGCTGAAGCTGCACCAGAAGGTAAGTACAGTCGAGTGCACAATAGTGAACCTCGCGGACCATCAGACGGAGCACTCGGACAGTTGTCTGTTAGAGTGTACCGAGTGCGACAAGCGGTACAAGCGACTCTCCTCGCTGAAGCTGCACCAGAAGGTAAGTACAGTCGAGTGCACAATAGTGAAACTCGCGGACCATCAGACGGAGCACTTGGACAGTTGTCTGTTCGAGTGTACCGAGTGCGACAAGCGGTACAAGCGACTCTCCTCGCTAAAGCTGCACCAAAAGGTAAGTACAGTTGAGTGCACAATAGTGAACCTCGCGGACCATCAGACGGAGCACTTGGACAGTTGTCTGTTCGAGTGTACCGAGTGCGACAAGAGGTACAAGCGACTCTCCTCGCTGAAGCTGCACCAGAAGGTAAGTACAGTTGAGTGCACAATAGTGAACCTCGCGGACCATCAGACGGAGCACTTGGACAGTTGTCTGTTCGAGTGTACCGAATGCGACAAGAGGTACAAGCGACTCTCCTCGCTGAAGCTGCACCAGAAGGTAAGTACAGTTGAGTGCACAATAGTGAACCTCGCGGACCATCAGACGGAGCACTTGGACAGTTGTCTGTTCGAGTGTACCGAGTGCGACAAGAGTTGTCTGTTCGAGTGTACCGAGTGCGACAAGAGGTACAAGCGACTCTCCTCGCTGAAGCTGCACCAAAAGGTAAGTACAGTTGAGTGCACAATAGTGAACCTCGCGGACCATCAGACGGAGCACTTGGACAGTTGTCTGTTCGAGTGTGCCGAGTGCGACAAGAGCACGCTGGCTGTGTGGGTTGGTGGAAGGGTGTGGTgtgggctagtggccaacccgactGTGCACTCTGGCCGGAGGCACGCCTGCCCCGTCTGCGGCAAGACATTCAACCAGCCGACGAACCGAGATAGACACCTAGCGCAGGTACACTCAGATGAAAAGAAGGTCGCCTGTCTCCTCTGCGACAAACGCTTCAAGAGTCACGGCGAACGCAAGAATCACACACAGCACGTCCACTTAGACAAGCCGTGGCCGCGACGGCGGCGGCAGCCAGCCAAGCGGCGGCAAGAGGACATGTTCATGTTGGGTAACATCCGTTCTGACACATCTTACACTAGCTAG
- Protein Sequence
- MKTYSAYRFHYQREHPNLTLARTKPCDHLCDVCGKQFSCAANLADHQTEHLDSCLFECTECDKRYKRLSSLKLHQKVSTVECTIVNLADHQTEHLDRCLFECTECDKRYKRLSSLKLHQKVSTVECTIVKLADHQTEHLDSCLFECTECDKRYKRLSSLKLHQKVSTVECTIVNLADHQTEHLDSCLFECTECDKRYKRLSSLKLHQKVSTVECTIVNLANHQMEHLDSCLFECTECDKRYKRLSSLKLHQKVSTVECTIVNLADHQTELSDSCLLECTECDKRYKRLSLLKLHQKVSTVECTIVKLADHQTEYLDSCLFECTECDKRYKRLSSLKLHQKVSTVECTIVNLADHQTEHLDSCLFECTECDKRYKRLSSLKLHQKVSTVECTIVNLANHQMEHLDSCLFECTECDKRYKRLSSLKLHQKVSTVECTIVNLADHQTEHSDSCLLECTECDKRYKRLSSLKLHQKVSTVECTIVKLADHQTEHLDSCLFECTECDKRYKRLSSLKLHQKVSTVECTIVNLADHQTEHLDSCLFECTECDKRYKRLSSLKLHQKVSTVECTIVNLADHQTEHLDSCLFECTECDKRYKRLSSLKLHQKVSTVECTIVNLADHQTEHLDSCLFECTECDKSCLFECTECDKRYKRLSSLKLHQKVSTVECTIVNLADHQTEHLDSCLFECAECDKSTLAVWVGGRVWCGLVANPTVHSGRRHACPVCGKTFNQPTNRDRHLAQVHSDEKKVACLLCDKRFKSHGERKNHTQHVHLDKPWPRRRRQPAKRRQEDMFMLGNIRSDTSYTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -