Agoe027135.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463811.1:4771643-4779076[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 37 0.041 11 9.5 0.4 1 22 75 96 75 96 0.95 2 37 0.21 55 7.3 0.4 3 23 125 145 124 145 0.94 3 37 0.37 97 6.5 0.3 2 23 168 189 167 189 0.96 4 37 0.016 4.2 10.8 0.1 1 23 193 215 193 215 0.95 5 37 0.023 6.1 10.2 0.2 1 23 220 243 220 243 0.89 6 37 0.12 30 8.1 0.2 1 23 249 272 249 272 0.94 7 37 0.042 11 9.4 2.6 1 23 279 302 279 302 0.97 8 37 9.8e-05 0.026 17.7 3.8 2 23 310 331 309 331 0.95 9 37 0.041 11 9.5 0.4 1 14 337 350 337 352 0.92 10 37 0.0016 0.42 13.9 1.8 1 23 417 439 417 439 0.98 11 37 0.47 1.2e+02 6.2 6.3 1 23 511 533 511 533 0.98 12 37 0.0019 0.49 13.7 0.5 1 23 537 559 537 559 0.96 13 37 0.32 83 6.7 1.5 1 23 595 617 595 617 0.95 14 37 1 2.7e+02 5.1 0.3 1 23 657 679 657 679 0.91 15 37 0.15 40 7.7 0.4 2 23 704 726 703 726 0.95 16 37 0.0049 1.3 12.4 1.5 1 23 747 769 747 769 0.98 17 37 0.00075 0.2 15.0 1.5 1 22 773 794 773 796 0.89 18 37 0.36 95 6.5 3.0 2 23 814 836 813 836 0.94 19 37 0.12 32 8.0 0.1 1 21 843 863 843 864 0.88 20 37 1 2.7e+02 5.1 0.0 1 23 919 941 919 941 0.93 21 37 5.5 1.4e+03 2.8 0.5 2 23 965 987 964 987 0.91 22 37 0.015 3.9 10.9 1.8 1 23 1009 1031 1009 1031 0.96 23 37 0.002 0.53 13.6 0.8 3 23 1037 1057 1036 1057 0.97 24 37 0.077 20 8.6 4.8 1 23 1064 1087 1064 1087 0.94 25 37 0.0062 1.6 12.1 1.1 1 23 1093 1116 1093 1116 0.95 26 37 0.86 2.2e+02 5.3 1.2 1 23 1122 1145 1122 1145 0.94 27 37 8.8e-05 0.023 17.9 1.5 1 23 1151 1173 1151 1173 0.97 28 37 6.4e-07 0.00017 24.6 2.0 1 23 1179 1201 1179 1201 0.99 29 37 9.8 2.6e+03 2.0 1.1 1 23 1269 1292 1269 1292 0.93 30 37 0.09 24 8.4 4.3 1 23 1358 1380 1358 1380 0.96 31 37 0.00058 0.15 15.3 0.2 1 23 1384 1406 1384 1406 0.98 32 37 0.038 9.9 9.6 0.1 1 23 1411 1434 1411 1434 0.95 33 37 0.00078 0.2 14.9 0.8 1 23 1440 1463 1440 1463 0.97 34 37 0.19 49 7.4 1.2 1 23 1470 1493 1470 1493 0.95 35 37 0.0024 0.62 13.4 1.9 1 23 1499 1521 1499 1521 0.93 36 37 7.5e-06 0.002 21.2 0.7 1 23 1527 1549 1527 1549 0.99 37 37 5.2e-06 0.0014 21.7 3.9 1 23 1555 1577 1555 1578 0.96
Sequence Information
- Coding Sequence
- ATGCCTAAGTCACGACGTCGCGGACAAACCCTCTGTGACTCGCTCGTTAAGATCGAACTCACTGACGCCACGGTCGATATCGAAAACTTACTGAACCCCAAAGAGAAGAAGGAGCCATACCAGCGCAGCGCCAGGGCCGAGTCTCGGTTCATCACCAAGAAGAACGCCAGAGCGATAATAGAGTGCTGGACGGTACACCCCTTCAGGTGGAACAAAAACCAGTTCATTTGCGCCTACTGTGAAGACAGCTTCAGAGACTGCGCCCTCCTCAGAAACCACGTCCGCATGTGTGCTGCTCTACACTGCGTCAAAGATATCTACAAGAAATTTAAAGAGATGGGACTCATCAACGTTGATATTACAGATGCAGCCTGTCGACTTTGCTCCCAAACATTCACTAATGTTGCTGACATGAAGTCCCATGTCACACTACACGGCTACGAGTTTGACTCCAACCATCCAGAAGGTGTCTTACCATTCCAGTTGAATAAAGACGTTTGGCGCTGCGTGATCTGCCTCGAGCAGTTTAACAACTTCCTCAAATTGTACGAACACATGAACATTCATTATCAGTATTACATCTGCGCCATTTGTGGAAAGGGCTACATGACCGCGCCTCGACTGCGAAAGCATTCCGAAGTTCACATCACAGGGTCGTTTCCTTGCAACGAGTGTGGAAGAATATTCTCGATGCGATCGGCAAGAGATTCTCACAAGGCGAGCGCCCACGCCAAAGGCCCTCGCTACGAGTGTCCGGTGTGCAAGATAAGATTCGACGGGTACTACGAACGGATGACGCATCTGAATGAAGAGCATCGTGAGAGGAAGGTGTCGTACTGCTGCCGGCATTGCGAGCTCTCGTTCGGTACGAGCGCCGCGCGTGCCAAACACGTGCGCACAGTGCACTTCCCGGCAGAGAGGGGGTGTCGTTGTCCGCACTGCGAATGGCAGTTCAAGACTCCGTATGAGCTGAAGCGGCACTTGGTGAAGCACACGGGGGAGAGGAACTTCCATTGCGGAGTCTGCGGCAAGTCGTTCCCGCGGAgttcCGCACAAGCGGAAGTAGGCGGTCGCGTTAGGAAGTTAAAAGAGAATGTGAGCGCGCGCACGCTGCGTCGCCGCCGGCGGCAGAACAACGAGCTGCCGGAGGAGTCGGAGAAGCGCATCGCCAAGACCATGATGAGGCGAAATGCTCTCATCATCATGGAGACGACTACCGCCTGGCCGTTCCGCTGGTGGCGGAACGCCTTCTACTGCTCATATTGCGACGCCAAGTTCGTCGACACGACGCCACTACGCGAGCACATGCACACCCACGCCACCGAACCACCAACAAAGAAAATCTTCGCCAAACTCACAGAGAATAACATGCTCAAAATCGACGTGACGTTTCTAAACTGCAGACTGTGCTGCCAGAATTTTAACAGCATCGACCTTTTGAAGTCCCATATAGTTTTAGATCACGGCAAGCTCTTGAACGAAGAGTACAGCGACGGAGTCCTTCCCTTCAAGTTGGACGATCACAGCGGCTTCTCATGCCAGAAATGCTGTGAGCATTTCATCAACTTCTCGAAACTGAACGAGCATATGAACTCGCACTACCAGAACCACGTGTGCGACGCGTGCGGGAAGGCGTTCGCCTCGGCGTCCCGCTTCCGCACGCACGCACAGTCGCACGAGACGGGACGGTTCCCGTGCGGTGCGGCCGGATGTAATGCGGTGTTGGCGACGCGCGCGCGGCGTATGGTGCACCGACTGACGTTACATAAGCAGGGAGTGCGGTACGCCTGTCCGCGATGCCAAGCTTGCTTCACCAGCTACCGAGCGAGAGGCAAACACCTGAATGAGCACGACACAGTTGTTCCCTTCACTGCAGGCGTGCCTACTGgCAGGAAGAGTTACCGGAGACACGTGCTCTTGGTCCTAAAGTACTCCAATGCGGTTCCGTTTCAATACAAGAGTAACAAATTCTTGTGTTGCTTCTGCGACGAGCCGGTGTCCAGTATGGAAAGTCTCCGAGTCCACGTGGCAGATCACAACACGCTCGATTTGTTCAAAACACGCCAAGTTTATAACACGTTTCCTATGAGCATTGACGTCACCGACCTCCGTTGCACCGTCTGCCAAAAACCCATGGAAACTTACAAGCTATTGGAACAGCATATCATAAAAAGGCACAGGGAGCCCTTGGCTCCAAGTCATGATGGAATTATGCCATTCGTTCTCGGGAATGGGGCATTCAAATGCGCCGCGTGCAACCGAGGCTTTACCAGCTACGGTCTCCTCTTCCATCACGCCAACACTCACAGCCAAGACCACGTGTGTCACAAATGTGGCGTAGCCTTCTCTCACAGGTCTGAACTGGATGTCCATTTGGGAGAGGATCacggaaaaaatataacccCGAGCGAAAAGTATAAAAACGCTGGTTTCAAATGTCGTTGTCCGCGATGCGACGCGACCTTCCAATCTAAAGGCAAGCGGTTGACACATCTGCGGGAGTTTCATGGCACGGCGACGATTGACTATCCCTGCAGGGAGTGCCCGATGGTATTTACCAGCTATGCATTGAGGAGAGCACATTTTAAGGTCTCGTCTTGCGCAGAAGTTTTACCGAGCATTTTCTCTTTGTTCATAGGGAAGGGCGCGCGGTTGAAATGGATCCCTCGCCGAAAGTTTAACGATCACAGGGACAATGCCGGCGTTCTCATATCGTGCTCCAACGCATGTCCGTTCAGGTTTAAGCGTGGTACTTTCATCTGCGCGTTCTGTCCAGAGCCATTCGCCGACTTCAGCGGAATACGCGAACATTCCGCCTCGCACGCCAACAAGATAGAGGTGCTACTACACGCTCGGCCGCGGGACAGAATTAAGATTGATGTGACAGGCCTCCGCTGCGAAATATGCCACCTCGAAATGAACGACGTTGATTATCTAGTTAACCATCTCATCCACGAGCACGATAAACACATTAATCTAGAATACGATTTAGGTCTAGCACCGTTCATACTAACGGGAGATAGCCATCCCTGCCTCAAATGCGATGAGAAATTTGAGCTATTCTCCAAATTAAACGAGCATATGAACCAGCACAACCCGAGCAACATCTGTTTTCATTGCGGGAAAGGTTTCTCGGCAGCTCAAAGATTAAAAGCACATCTCTTGACGCACGAAGTCGACGGCTCAGAGCACAAGTGCACTAAATGTGGCCAAGTGTTCCCAAGTCGACTGCACAGGAACAACCACCTGATACATGCCCACGCGCCTGTCCACAGATACAGGTGTCCGCGTTGTAGCGAGTCGTTCAAACGGTATCCGGACCGATCCCGCCATCTCAAAGATGTTCATGGGAGGAAGGTGGAATACCCTTGCAACTTCTGTCCTTCCGTTTTCGCACTCTGCAACCAGCGAACAAGGCACATCAGCCAGGTTCATATAAAAGTAAAGAAATTCTGTTGCACACTGTGTCCGATGCGGTTCGTCACTGCTGGACAGTTGAAGAACCATATGATTAAACACACAGGAGAAAGAATATTTCAGTGCCAAGTGTGTAAGAAATCGTTTGCTAGATCGAAAACTCTAAAAGAACACATGCGAATACATAATAACGATAGAAGGTTTATATGTGAGTATTGCAATAGACCCAAATCCGAAGAGATTCAGATAAAGCTTGAAGCGGGATCTGACACTGaggccgccgcgccgccgaATGCCGAGTGCGAGCGACGGGAAGTGTTCCGACAGAACATTGCCATTATCATACAGTCGTGCACCGCCTGCCCTTTCAAATACCGCAGGGGCACCTACCTCTGCTTCTTTTGCAAAACCACCTTCCTAGAGCCCGATAAGATGAGAGAACACACCCTAACACTACACTCGGATGTCACGCAACTCGCAAAACCGAGGAAGTACGAACCGCTCAAGATAGACTTCTACATGACTCACTGCAGGATTTGCGGTGACCTCATTCCGGACTACGATAGTTTGAAGGCCCATTTACTGCAGCACGGGAAGTTTATTAATTGTTCGTACGGCGACAGCGTGCTTCCATACAAGCTGACGAAGGACGAGCATTACTGCCAGGTCTGCGGCAAGCGATATGAGATGTTCCTCAGTCTACACAAGCATATGAACGACCACTATGAACACTACATCTGTGAGACCTGCGGAAAAGGTTTTGCTACCTCTCAGCGGATGGTGAACCACGCCAGAACTCACGAGCGCGGCCGATTCCCCTGCAAGGTCTGCGCAGAACCGTTCCCTTCCTATGCGACCTTACACGCACACGTCGCAAAAGCCCACCGCTCCAACAAGCGATACAAATGTCCCATTTGCGAGGAGAAATTTGCGTCGTACAAACAGCGGCTTAAACACTTGAGGAACATCCACGGGGAAAAGACAGCTGAGTTTCCTTGCCCGTCCTGCCCTCGAGTGTTCGATCTGTGCAGTCGGCGCACCGCACACATCCGCTTCCAACACCTACAGGAGCGAAACCACGTCTGCACAGTCTGCGGCATGAAGTTCTTCACGAAATACGAACTGCAAGAACATTCGGTAAAGCATGGAGGAGAAAGGATTTTCCAATGTGACGTGTGTAAGAAGGCGTACGCGAGACTGAAGACTTTGAGGGAGCACATGAGGATACATAACAATGACAGGCGGTTTGTGTGTACAGTGTGCGGTCAGACCTTCGTACAGAACTGTAGTTTGAAGCAGCATATGAGAGTGCATCATCCGGTGCATTTGAAAGAAGTTTTCTAG
- Protein Sequence
- MPKSRRRGQTLCDSLVKIELTDATVDIENLLNPKEKKEPYQRSARAESRFITKKNARAIIECWTVHPFRWNKNQFICAYCEDSFRDCALLRNHVRMCAALHCVKDIYKKFKEMGLINVDITDAACRLCSQTFTNVADMKSHVTLHGYEFDSNHPEGVLPFQLNKDVWRCVICLEQFNNFLKLYEHMNIHYQYYICAICGKGYMTAPRLRKHSEVHITGSFPCNECGRIFSMRSARDSHKASAHAKGPRYECPVCKIRFDGYYERMTHLNEEHRERKVSYCCRHCELSFGTSAARAKHVRTVHFPAERGCRCPHCEWQFKTPYELKRHLVKHTGERNFHCGVCGKSFPRSSAQAEVGGRVRKLKENVSARTLRRRRRQNNELPEESEKRIAKTMMRRNALIIMETTTAWPFRWWRNAFYCSYCDAKFVDTTPLREHMHTHATEPPTKKIFAKLTENNMLKIDVTFLNCRLCCQNFNSIDLLKSHIVLDHGKLLNEEYSDGVLPFKLDDHSGFSCQKCCEHFINFSKLNEHMNSHYQNHVCDACGKAFASASRFRTHAQSHETGRFPCGAAGCNAVLATRARRMVHRLTLHKQGVRYACPRCQACFTSYRARGKHLNEHDTVVPFTAGVPTGRKSYRRHVLLVLKYSNAVPFQYKSNKFLCCFCDEPVSSMESLRVHVADHNTLDLFKTRQVYNTFPMSIDVTDLRCTVCQKPMETYKLLEQHIIKRHREPLAPSHDGIMPFVLGNGAFKCAACNRGFTSYGLLFHHANTHSQDHVCHKCGVAFSHRSELDVHLGEDHGKNITPSEKYKNAGFKCRCPRCDATFQSKGKRLTHLREFHGTATIDYPCRECPMVFTSYALRRAHFKVSSCAEVLPSIFSLFIGKGARLKWIPRRKFNDHRDNAGVLISCSNACPFRFKRGTFICAFCPEPFADFSGIREHSASHANKIEVLLHARPRDRIKIDVTGLRCEICHLEMNDVDYLVNHLIHEHDKHINLEYDLGLAPFILTGDSHPCLKCDEKFELFSKLNEHMNQHNPSNICFHCGKGFSAAQRLKAHLLTHEVDGSEHKCTKCGQVFPSRLHRNNHLIHAHAPVHRYRCPRCSESFKRYPDRSRHLKDVHGRKVEYPCNFCPSVFALCNQRTRHISQVHIKVKKFCCTLCPMRFVTAGQLKNHMIKHTGERIFQCQVCKKSFARSKTLKEHMRIHNNDRRFICEYCNRPKSEEIQIKLEAGSDTEAAAPPNAECERREVFRQNIAIIIQSCTACPFKYRRGTYLCFFCKTTFLEPDKMREHTLTLHSDVTQLAKPRKYEPLKIDFYMTHCRICGDLIPDYDSLKAHLLQHGKFINCSYGDSVLPYKLTKDEHYCQVCGKRYEMFLSLHKHMNDHYEHYICETCGKGFATSQRMVNHARTHERGRFPCKVCAEPFPSYATLHAHVAKAHRSNKRYKCPICEEKFASYKQRLKHLRNIHGEKTAEFPCPSCPRVFDLCSRRTAHIRFQHLQERNHVCTVCGMKFFTKYELQEHSVKHGGERIFQCDVCKKAYARLKTLREHMRIHNNDRRFVCTVCGQTFVQNCSLKQHMRVHHPVHLKEVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -