Agoe097120.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463829.1:8490917-8503107[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0033 0.86 12.9 1.1 1 23 147 170 147 170 0.96 2 19 1.3e-05 0.0035 20.5 2.4 1 23 179 201 179 201 0.97 3 19 4.5e-05 0.012 18.8 1.2 1 23 208 231 208 231 0.95 4 19 4.6e-05 0.012 18.8 0.6 2 23 257 278 256 278 0.97 5 19 4.4e-05 0.012 18.8 1.5 3 23 287 307 285 307 0.96 6 19 1.8e-05 0.0047 20.0 0.6 1 23 313 336 313 336 0.98 7 19 0.0031 0.8 13.0 1.3 1 23 409 432 409 432 0.93 8 19 1.4e-06 0.00038 23.5 1.6 1 23 441 463 441 463 0.98 9 19 0.00011 0.03 17.5 2.8 1 23 470 493 470 493 0.91 10 19 0.00066 0.17 15.1 2.3 3 23 520 540 519 540 0.99 11 19 0.0013 0.35 14.2 2.7 3 23 549 569 547 569 0.96 12 19 2.7e-05 0.007 19.5 0.3 1 23 575 598 575 598 0.97 13 19 3.6e-05 0.0094 19.1 1.0 1 23 608 630 608 630 0.98 14 19 0.0003 0.078 16.2 6.4 1 23 636 658 636 658 0.96 15 19 0.0022 0.58 13.5 0.3 1 23 664 686 664 686 0.97 16 19 0.0006 0.16 15.3 4.5 1 23 692 714 692 714 0.98 17 19 8.8e-05 0.023 17.9 5.6 1 23 720 742 720 742 0.98 18 19 2.1e-05 0.0056 19.8 2.9 1 23 748 770 748 770 0.98 19 19 4.2e-05 0.011 18.9 0.8 1 23 776 798 776 798 0.97
Sequence Information
- Coding Sequence
- ATGGAGAATGAGGATTCACCACTCACAGACTGGGATTCTTGCTGCCGAACTTGCATGGGCAGCTCGGTGGCGATGTTTGGCGTATATTCCAAGTGCAATGAAGATATAATCGCTGATTTACTGACTACGCTTGCACACATAGCGATTGATGTCAATGATGATCTACCGAAGTTGATATGTGCCACTTGCTACAATAAGCTGAATGATTTTACAATCTACATAAGTCAGGCTACAGCAGTAGAAGCAAAACTTAGGACTCTAGTCAAGCTAAAAGACTTGCAAGAAACAGAGGACAACATCGTTAAAATAAAAGTTGAAGTCAATCAAGATCAACCCATCATTAATGGTGTAAAAAAGAATGATTGTGGTGACAAGCCTGAGCCATCACAACATGTTGCTGATCATTCTTTATCTGTcctaaagtcaaaaaaatatcagtaCACATGTGACATATGCTTTGTAACTTTCAGCAGACTTTTATCATTGAAGGAGcacaaaacaaaagtacatcCACAAGCGAATTTAAAATGTGAGTTTACTTGCAATGTATGCAACAAAATTTTCAAGACCAACTCTAAATTGACACAGCACAAGCTGTTGCACATACCCAAAACCCACCAATACCCCTGTCAGCACTGCCCAGAAAGTTTTAAACGACAAACTTTACTTGGGAAACATATATTGCTGAAACATGGGGCAAATGGAGAAGCTCAAAACAGCTCAGATGAAGAAGCAAGACTGGAAATAATGGGAAAGCTACTAAGTATGCCATGTAATATTTGCCAAGAAATATTTAAGTCACAACATGCACTAGCAGCCCATACGAGAAAGCATATAGAACCGGGCCGTGTCCTAGCCTGTTCAGTTTGCAGCAAAGAATTCAAGAGAGCCAGCCATGTGAAACGTCATGAGCGAATCCATGGGATCAACTGCCCTTTCAAGTGTTCTTTATGTCCAAAATCGTTTTACTCTGAAGACATGTTGCTGTGGCATATCAATAAACAGCATGAAGGGAATTCGGTAATGGTCACTCGAGAAAACCAATTGAGTCGATCCCAAGCCATGGAGGACAAgacaattgaaataaaaattgaaCCCAATCAAGATCAACTTACCAAAGATGATGTCCAACAAAATGATTCTGATGATCTGCCAGAGCCATCACCATATGacgctgatgatgatgatgtacctTTAATGATCATGAAGACAAGAAAATCTCGGTTCACCTGTGATATATGCTTTGAAATTTTTAGCAGACATGTATATTTGAAGGAGCATAAAGCAAATATACATCCAGAAGCAAACTTGAAATGTGTGTTCACATGTGATGTCTGCAACAGAGTCTTCAAGAGCAACTCAAAATTGTCACGGCACCAACTCATGCACAAACCGAAGAACTACCAATACCAATGTCCTCACTGCCCAAAAAGTTATAAACAGCAGAGTTTCCTTGACAATCATGTATTCCTGAAACACGGACCAAatggagaaattaaaaataGCTCAAATAACGACACTAAACCAGAAATAAAAGCAGAGCTAGAAGAAATATTGTGTAACATTTGCCAAGAAACATTCCAGTCCCAACATTCACTGGTAGCCCATAAGAGAAAGCATGTAAAACCGGGGCGGGTCTTAGCCTGTTCAATATGCAGCAAAGAATTCAAGAAATTCAGCCATGTTAAGCGGCATGAACTCACACATGAGGTCAACCGCCCCTTCAAGTGTGGTGTGTGTCCAAAATCGTTTTATGTTGAAGACATGTTAATAAGACATATGGACAAACAGCATAAAGGGAAGCCAGGACCGGCCTCTCAATTCACTTGTGCTTATTGCTCTAAAGATTTCAGTTATATGTCATCATTACGAGAGCATATAAAGATACATATGGGCCTTAGGGCATATCTGTGTCCTACTTGTGGAAAGCGATTTCATTGCAATAGTAATTTGAAGCAACATATGCGGAGACATGTTGGGGACAAGCCGTTTGTATGTGATATGTGCCCGAGAAAGTTTATCAGTaaagGCGAAATGATGGGTCACCGGACCTCTCATACTGGCGAGAAGCCATTCAAGTGCACTCAATGTGGCTCGGCGTTCACCAAGTCACACTCACTCGTCAAACACAAGCAGAAACACCTGGGGATCAAACCGCACGAGTGCGATGTGTGCTCTATGAGGTTCTTCAACAAGTCCCACCTGCAGCGTCACTACCGCATCCACACCGGAGAGAAGCCTTACCATTGCGAAATGTGTGAACGCACCTTCACGCAGAGCGCTGATCTGCTCAAACACAAGCGCTCGCATCTCGGTGATAAGATTTATAAATGTAACCAGTGCAACGAGAGCTTTCGTCTCAAGGGTGAGCTCAACCAGCATCTGTCGGGACACTACCTGTCTTCGAAACTGGAAGCCGCAAGAAAGAATAGCGAGAAGACTGAAGCAGATATTGTACAAAATATTCGATAG
- Protein Sequence
- MENEDSPLTDWDSCCRTCMGSSVAMFGVYSKCNEDIIADLLTTLAHIAIDVNDDLPKLICATCYNKLNDFTIYISQATAVEAKLRTLVKLKDLQETEDNIVKIKVEVNQDQPIINGVKKNDCGDKPEPSQHVADHSLSVLKSKKYQYTCDICFVTFSRLLSLKEHKTKVHPQANLKCEFTCNVCNKIFKTNSKLTQHKLLHIPKTHQYPCQHCPESFKRQTLLGKHILLKHGANGEAQNSSDEEARLEIMGKLLSMPCNICQEIFKSQHALAAHTRKHIEPGRVLACSVCSKEFKRASHVKRHERIHGINCPFKCSLCPKSFYSEDMLLWHINKQHEGNSVMVTRENQLSRSQAMEDKTIEIKIEPNQDQLTKDDVQQNDSDDLPEPSPYDADDDDVPLMIMKTRKSRFTCDICFEIFSRHVYLKEHKANIHPEANLKCVFTCDVCNRVFKSNSKLSRHQLMHKPKNYQYQCPHCPKSYKQQSFLDNHVFLKHGPNGEIKNSSNNDTKPEIKAELEEILCNICQETFQSQHSLVAHKRKHVKPGRVLACSICSKEFKKFSHVKRHELTHEVNRPFKCGVCPKSFYVEDMLIRHMDKQHKGKPGPASQFTCAYCSKDFSYMSSLREHIKIHMGLRAYLCPTCGKRFHCNSNLKQHMRRHVGDKPFVCDMCPRKFISKGEMMGHRTSHTGEKPFKCTQCGSAFTKSHSLVKHKQKHLGIKPHECDVCSMRFFNKSHLQRHYRIHTGEKPYHCEMCERTFTQSADLLKHKRSHLGDKIYKCNQCNESFRLKGELNQHLSGHYLSSKLEAARKNSEKTEADIVQNIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -