Agoe062745.4


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Argyresthia goedartella
Gene Symbol
-
Assembly
GCA_949825045.1
Location
OX463819.1:12078222-12112780[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.00066 0.17 15.1 0.6 1 23 341 364 341 364 0.96
2 22 0.4 1e+02 6.4 0.9 3 23 372 392 370 392 0.94
3 22 2.7e-05 0.0072 19.5 1.7 2 23 399 420 398 420 0.94
4 22 0.00016 0.042 17.1 3.2 1 23 426 448 426 448 0.96
5 22 0.00019 0.049 16.9 0.7 1 23 457 479 457 479 0.96
6 22 0.00017 0.045 17.0 0.3 3 23 487 507 485 507 0.96
7 22 0.6 1.6e+02 5.8 0.4 1 14 513 526 513 527 0.90
8 22 0.1 27 8.2 0.2 7 23 569 585 569 585 0.97
9 22 0.6 1.6e+02 5.8 0.4 1 14 591 604 591 605 0.90
10 22 0.1 27 8.2 0.2 7 23 647 663 647 663 0.97
11 22 0.6 1.6e+02 5.8 0.4 1 14 669 682 669 683 0.90
12 22 0.1 27 8.2 0.2 7 23 725 741 725 741 0.97
13 22 0.029 7.5 10.0 11.6 1 23 747 769 747 769 0.98
14 22 1.7e-08 4.5e-06 29.6 0.9 1 23 775 797 775 797 0.99
15 22 1.7e-08 4.5e-06 29.6 0.9 1 23 803 825 803 825 0.99
16 22 1.7e-08 4.5e-06 29.6 0.9 1 23 831 853 831 853 0.99
17 22 2.5e-09 6.5e-07 32.2 1.3 1 23 859 881 859 881 0.99
18 22 2.5e-09 6.5e-07 32.2 1.3 1 23 887 909 887 909 0.99
19 22 4.3e-06 0.0011 22.0 1.3 1 23 915 937 915 937 0.99
20 22 0.00025 0.067 16.4 0.1 1 23 943 964 943 964 0.97
21 22 0.038 9.9 9.6 1.4 3 23 972 993 970 993 0.88
22 22 2.7e-06 0.00071 22.6 2.1 1 23 999 1021 999 1021 0.98

Sequence Information

Coding Sequence
ATGCCCCACGATCTACCGTACCTAAGCAGCGTCCACCCTGACTTCGCGGCTACTGGAGTGTCAGCTGTGGACACATCGGCGGGAGTGATACGGGGTAGACCATACGGAGGTGTCGCTATATTATGGCGTAAAAGTGCGTTCGATCGAGTTTCGGTCATCCAGTGTAAAAGTGTTCGGCTGGTGGCTGTAAGGTGTGAAGTGGCAAGTCGTTCTGCGATATTCTTTTCAGTATACATGCCTACAGACTCGAAGGTAAATCTAGTAGATTTTACTGAGTGCCTAGCTGAAATAAGTGCTATTATCGACGACAACAACGCTGACAATGTATACATACTTGGGGATTTTAACGCGCACCCAGAGGCATGTGATTTGCAGAATATTTGTAGATTGTGTCTAACAGTTGCACCTGGAGCCGACAATATGGTTCCCTTACTGCCGGATGACACACCTGGTCATCTAGTAAACCAATTGCAGTCTTTTGCATCTGTTGAGATACTACCTGACTGTCAACTGCCTTCACATACATGTATGGTCTGCTTCAAGCTCATTCTCAAATGTTATGAATTCAAACTGCAGTGTGAAAGATCTGACCTGACCATCAAATCAGTATTGCAAGGAGAGTTTGTTAAGGATGAACCAAATGATACGGAACCGGTTCATGATACAGAAGTATTTGAATTTTGCCCTGTTGCTGTGGAAATAGAGACAGATTTTAAAGACGATCCTGAAGCAATTAGCAATTCTGAAGTTCAGCCGCATCAAACATATAATCCGATTTCAAAAGAAAAAAGAATGCAACGGAGAAAATTTGAATTTTGCCCTGTTGCTGTGGAAATAGAGACAGATTTTAAAGACGATCCTGAAGCAATTAGCAATTCTGAAGTTCAGCCGCATCAAACATATAATCCGATTGCAAAAGAAAAAAGAATGCAACGGACAAAAAACAATCACATCAAACCTGAACGAATCAAACATTCAAGaacattttttaaaaaaacagaGCTAGAAGAACCATCACTACATCAATGTAATATTTGCTCTGAGGAATTCCCAAAATCAAACTTGCTTCAAGTTCACCTTAAACTGGTACACTCAGAGGAGAAGGTTATCAACTGTAACAAGTGCAGGTCTACATTCGCGTCGGAGCGAGATTACAACTTGCACACGTCGCTTCACACGGCCGGGAGGAAACTCAAGTGTATTGAGTGTCAAAAGGAATTCAGCTCCAAGTCGCAGCTGCGCCGCCACATCCAGCGCCACATGGACCACAAGAGGCACGCGTGCGACTTGTGCCCTAAGACGTTCAGCGAGCAGTGCGGACTGACGCGTCACCGCCGCGTGCACACGGGGCAGGCGGAGGAGAAGAAGCACATGTGTGATGAGTGCGGCAAGAGATTCTCCGGTTTGACGGCGCTACGCGTCCACAGCCTGACGCACACAGGCGAGCGTCCGATCGCGTGCGCGCGCTGCGACAAGCGCTTCAAGTCGGAGCGCCTGCTCGCCTCGCACATGCTGACACACGACGAGACCAAACCGCACCAGTGTCACTACTGCGAGCGACGTGTCACTACTGCGAGCGACGGTAAGCGGTATATTAGACAAGCGCTTCAAGTCGGAGCGCCTGCTCGCCTCGCACATGCTGACACACGACGAGACCAAACCGCACCAGTGTCACTACTGCGAGCGACGGTAAGCGGTATATTAGACAAGAGCTTCAAGTCGGAGCGCCTGCTCGCCTCGCACATGCTGACACACGACGAGACCAAACCGCACCAGTGTCACTACTGCGAGCGACGTGTCACTACTGCGAGCGACGGTAAGCGGTATATTAGACAAGAGCTTCAAGTCGGAGCGCCTGCTCGCCTCGCACATGCTGACAAACGACGAGACCAAACCGCACCAGTGTCACTACTGCGAGCGACGGTAAGCGGTATATTAGACAAGAGCTTCAAGTCGGAGCGCCTGCTCGCCTCGCACATGCTGACACACGACGAGACCAAACCGCACCAGTGTCACTACTGCGAGCGACGTGTCACTACTGCGAGCGACGGTAAGCGGTATATTAGACAAGAGCTTCAAGTCGGAGCGCCTGCTCGCCTCGCACATGCTGACGCACGACGAAACCAAACCGCACCAGTGTCACTACTGCGAGCGACGGTAAGCGGTATATTAGACAAGAGCTTCAAGTCGGAGCGCCTGCTCGCCTCGCACATGCTGACACACGACGAGACCAAACCGCACCAGTGTCACTACTGCGAGCGACGGTTCCGTCACGAGTCGACGCGCACCGCACACCACCGCACGCACACAGGCGAGCGGCCCTACGTGTGCTCTGTGTGCGGCAAGACCTTCATGCAGAACTCCAACCTCACGTTACACATGCGCACGCACACTGGCGAGCGGCCCTACGTGTGCTCTGTGTGCGGCAAGACCTTCATGCAGAACTCCAACCTCACGCTACACATGCGCACGCACACTGGCGAGCGGCCCTACGTGTGCTCTGTATGCGGCAAGACCTTCATGCAGAACTCCAACCTCACGCTACACATGCGCACGCACACTGGCGAGCGGCCCTACGTGTGCTCTGTGTGCGGCAAGACCTTCAAGCAGAACTCCAACCTCACGCTACACATGCGCACGCACACTGGCGAGCGGCCCTACGTGTGCTCTGTGTGCGGCAAGACCTTCAAGCAGAACTCCAACCTCACGTTACACATGCGCACGCACACTGGTGAAAAGCCGTACACTTGCAGCGTGTGCAGTCGCTCGTTCAGTTCGGGTTCGTCGCTCAAGAACCACGTGCGGACTCACACCGGAGAGAAACCGTATCAATGCGGCATCTGCGGCAAGAGGTTCGCACGCGTGGACTTGCGAGCACACATACTGCGTCACTCGGGTCAGCGGCCGTACGGTTGCCGCGCGTGCCACAAGCGCTTCTACACGGCCAGCCGGCTGCGGCGCCACGCCGCGTACGTCCATGCCGATCAGCAGCAGTTCGAATGCGCGAAATGCGACGAACGGTTCGTGACTAAGTCGCACCTCATCAAGCACGTCAAAACGCACGACGACGCCAAGAAACGGAAAAGATCGAACAAAAAGATCCTCCTAGTCCACAGAGTCACTGACGACTCGCCGTACCTACAGAATATCATAGTGAGCGACAAAGACATGTGCGCGGAAGAGGTGGTGATATCGCAACAAGAGAACACAACCAGTGACATAACAGAGAATATGACCGTAGCCCTGGCCGACGGAATACCAATAGAAGCAACTACATTCCAAGATATACCCAAAACTGAGCTGATAGTCCTGCAAAATCTGGAAGAGAATTGCCAGCAGAATTGCAATGCCCAGGACGGTGTGAACCTGCTGAATTTGGACAATAGCGTGAATATGGTCACGGTCAGTGAAGGGACTACGATAGAGGGCGCTAGTGTGAAGTTGTATCAACTGGACCAAAGTTTGGTACAAATACACACGTCGGGTGGACAAGTCACCATTAGCAAGATTACTAGTAAAGTGACTGCGAACTTTGAatga
Protein Sequence
MPHDLPYLSSVHPDFAATGVSAVDTSAGVIRGRPYGGVAILWRKSAFDRVSVIQCKSVRLVAVRCEVASRSAIFFSVYMPTDSKVNLVDFTECLAEISAIIDDNNADNVYILGDFNAHPEACDLQNICRLCLTVAPGADNMVPLLPDDTPGHLVNQLQSFASVEILPDCQLPSHTCMVCFKLILKCYEFKLQCERSDLTIKSVLQGEFVKDEPNDTEPVHDTEVFEFCPVAVEIETDFKDDPEAISNSEVQPHQTYNPISKEKRMQRRKFEFCPVAVEIETDFKDDPEAISNSEVQPHQTYNPIAKEKRMQRTKNNHIKPERIKHSRTFFKKTELEEPSLHQCNICSEEFPKSNLLQVHLKLVHSEEKVINCNKCRSTFASERDYNLHTSLHTAGRKLKCIECQKEFSSKSQLRRHIQRHMDHKRHACDLCPKTFSEQCGLTRHRRVHTGQAEEKKHMCDECGKRFSGLTALRVHSLTHTGERPIACARCDKRFKSERLLASHMLTHDETKPHQCHYCERRVTTASDGKRYIRQALQVGAPARLAHADTRRDQTAPVSLLRATVSGILDKSFKSERLLASHMLTHDETKPHQCHYCERRVTTASDGKRYIRQELQVGAPARLAHADKRRDQTAPVSLLRATVSGILDKSFKSERLLASHMLTHDETKPHQCHYCERRVTTASDGKRYIRQELQVGAPARLAHADARRNQTAPVSLLRATVSGILDKSFKSERLLASHMLTHDETKPHQCHYCERRFRHESTRTAHHRTHTGERPYVCSVCGKTFMQNSNLTLHMRTHTGERPYVCSVCGKTFMQNSNLTLHMRTHTGERPYVCSVCGKTFMQNSNLTLHMRTHTGERPYVCSVCGKTFKQNSNLTLHMRTHTGERPYVCSVCGKTFKQNSNLTLHMRTHTGEKPYTCSVCSRSFSSGSSLKNHVRTHTGEKPYQCGICGKRFARVDLRAHILRHSGQRPYGCRACHKRFYTASRLRRHAAYVHADQQQFECAKCDERFVTKSHLIKHVKTHDDAKKRKRSNKKILLVHRVTDDSPYLQNIIVSDKDMCAEEVVISQQENTTSDITENMTVALADGIPIEATTFQDIPKTELIVLQNLEENCQQNCNAQDGVNLLNLDNSVNMVTVSEGTTIEGASVKLYQLDQSLVQIHTSGGQVTISKITSKVTANFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-