Agoe078818.1
Basic Information
- Insect
- Argyresthia goedartella
- Gene Symbol
- -
- Assembly
- GCA_949825045.1
- Location
- OX463823.1:23816982-23818777[-]
Transcription Factor Domain
- TF Family
- SAND
- Domain
- SAND domain
- PFAM
- PF01342
- TF Group
- Other Alpha-Helix Group
- Description
- The DNA binding activity of two proteins has been mapped to the SAND domain. The conserved KDWK motif is necessary for DNA binding, and it appears to be important for dimerisation [1]. This region is also found in the putative transcription factor RegA from the multicellular green alga Volvox cateri. This region of RegA is known as the VARL domain [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00051 34 7.0 0.0 51 69 75 93 71 95 0.87 2 6 0.31 2.1e+04 -2.0 0.0 57 68 156 167 150 169 0.71 3 6 0.00047 31 7.1 0.0 52 69 226 243 222 245 0.89 4 6 0.00095 63 6.1 0.0 53 69 302 318 297 320 0.88 5 6 0.008 5.3e+02 3.2 0.0 51 66 375 390 370 399 0.86 6 6 0.39 2.6e+04 -2.3 0.0 54 65 463 474 459 480 0.82
Sequence Information
- Coding Sequence
- ATGGACAGACCCGTTAAAATGATAAATAAAACACTTTATCTGCTACTCAGTTTCGCAGTGGCCACAGTAGTTGCATACGATGGATACAATCCATCCATTTGCGCGACCTCAAACTCAGAGGGCACTTTAGTTCCCCATGAAGAGTGCAATAAGTTCTACGAATGTGCTGGTGGTCGCCCGGTGGAACTAGAGTGCCCCGACGATACTTTGTACAACCCAGATGCTAAACGATGTGACTGGAAAGAAAATGTTAACTGTGGCAACCGGACCTTAGCAACATCCAGAATTGGTAACTACAACGATAATGGCCCTGAACTAGAGATCTGTGCCGCCGCAAACTCAGAAGGCACTTTAGTTCCCCATGAAGAGTGCAATAAGTTCTACGAATGTGCTGGTGGACGCACGGTAGAACTAGAGTGCCCCGACGATACTTTGTACAACCCTGATGTTAAACAATGTGACAGGAAAGGAAATGTTAACTGTGGTAACCGAACCCTAGCAACATTCAGAGTTGGTAACTACAACGGTACTGGCCCTGAACTAGAGATCTGTGCCGCCGCAAACTCAGAAGGCACTTTAGTTCCCCATGAAGAGTGCAATAAGTTCTACGAATGTGCTGGTGGACGCCCGGTAGAACTAGAGTGCCCCTACGATACTTTGTACAACCCTGATGTTAAACAATGTGACTGGAAAGGAAATGTTAACTGTGGTAACCGAACCCTAGCAACATTCAGAATTGGTAACTACAACGGTACTGGCCCTGAACTAGAGATCTGTGCCGCCGCAAACTCAGAAGGCACTTTAGTTCCCCATGAAGAGTGCAATAAGTTCTACGAATGTGCTGGTGGACGCCCGGTGGAATTAGAGTGCCCTGGCGATACTTTGTACAACCCTGATGTTAAACGATGTGACTGGAAAGGAAATGTTAACTGTGGCAATCGCACCTTAGAAACATCCAGAATTGGTAACTACAACGGTACTGGCCCTGAACTAGAGATTTGTGCCGCCGCAAACTCAGAAGGCACTTTAGTTCCCCATGAAGAGTGCAATAAGTTCTACGAATGTGCTGGTGGACGCCCGGTGGAACTAGAGTGCCCTGGCGATACTTTGTACAACCCTGATGCTAAACGATGTGACTGGAAAGGAAATGTTAACTGTGGTAACCGAACGCAATTAGCCATACCAGTTGAGAACAGTGTGTTAAAGTATgtgtataaaatattaaatgaaaaCTTCAAATCAGCGGCAGAGGACTGTGCGGCCTCTAATTCAGAAGGACTGTTAGTTCCCCATGAAGACTGCAACAAGTTCTACGAATGTGCTGGAAGTCGTCCCGTAGAGTTAAATTGTCCTGAAGATACATTATACAAACCTGATATCAAAAGATGCGACTGGCCTGAAAACGTCGACTGTGGTGGGCGAGCTCAGTTCAAGATTCTACAGTGA
- Protein Sequence
- MDRPVKMINKTLYLLLSFAVATVVAYDGYNPSICATSNSEGTLVPHEECNKFYECAGGRPVELECPDDTLYNPDAKRCDWKENVNCGNRTLATSRIGNYNDNGPELEICAAANSEGTLVPHEECNKFYECAGGRTVELECPDDTLYNPDVKQCDRKGNVNCGNRTLATFRVGNYNGTGPELEICAAANSEGTLVPHEECNKFYECAGGRPVELECPYDTLYNPDVKQCDWKGNVNCGNRTLATFRIGNYNGTGPELEICAAANSEGTLVPHEECNKFYECAGGRPVELECPGDTLYNPDVKRCDWKGNVNCGNRTLETSRIGNYNGTGPELEICAAANSEGTLVPHEECNKFYECAGGRPVELECPGDTLYNPDAKRCDWKGNVNCGNRTQLAIPVENSVLKYVYKILNENFKSAAEDCAASNSEGLLVPHEDCNKFYECAGSRPVELNCPEDTLYKPDIKRCDWPENVDCGGRAQFKILQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -