Aalb023239.1
Basic Information
- Insect
- Argyresthia albistria
- Gene Symbol
- -
- Assembly
- GCA_963457715.1
- Location
- OY735282.1:476958-479869[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.9 5.8e+02 1.8 1.6 5 19 18 32 10 33 0.81 2 17 0.22 13 7.1 0.5 3 23 83 104 81 104 0.92 3 17 0.28 16 6.7 1.3 2 23 133 155 132 155 0.96 4 17 0.011 0.63 11.1 0.6 2 23 178 199 177 199 0.96 5 17 1.1e-05 0.00065 20.5 0.4 1 23 204 227 204 227 0.97 6 17 0.087 5.1 8.3 1.6 1 21 231 251 231 252 0.93 7 17 0.0004 0.023 15.6 0.1 1 23 289 312 289 312 0.91 8 17 0.015 0.87 10.7 0.1 2 23 318 340 317 340 0.92 9 17 0.001 0.06 14.4 6.8 1 23 346 369 346 369 0.97 10 17 0.99 57 5.0 0.1 3 23 377 397 375 397 0.96 11 17 5.3 3.1e+02 2.7 2.2 3 23 433 454 431 454 0.92 12 17 1.6e-05 0.0009 20.1 0.4 1 23 552 575 552 575 0.96 13 17 2.6 1.5e+02 3.6 0.3 1 19 580 598 580 600 0.83 14 17 2.2 1.3e+02 3.9 1.2 1 21 608 628 608 631 0.85 15 17 0.063 3.6 8.7 1.6 1 23 638 661 638 661 0.97 16 17 0.0025 0.15 13.1 0.1 1 23 666 688 666 688 0.98 17 17 0.00017 0.01 16.8 4.9 1 23 694 716 694 717 0.96
Sequence Information
- Coding Sequence
- ATGAAGGAGCATCAGTATGCATCTGTTAAGTGCTCCAAGAGTCTGACTTGTTCCTGCGGTGAGCGCTTTAGGACCTCCAGAGACAAACGTTTACACGAAGTCTGTGACCATCCTGAAGTAATAGAGAAGGAAGAAGAAGATCAATTACGAAGAAAGGAACAAATAAGGGAGCTGAAGAGATATTTAAGCGTGATCCTTGAAAACACGACCGCATATGCATTCTATATAGCCAAGGGCAGAATAATATGCGCCTACTGCAGTATGCACGTCGTTCAACCTTCGACCTACGTGGCTCATATGCACGACCGACACTCCAGTGGCGCCAACAAACTCAAAGGGATCCTGTCTAAGATAGTACAACCAACCATCAAACTCAAAATAGAATGCTCGGATTTAAAATGCAGATTATGCTCTGAAGAGTTTGAAGACCTAACCTCAATATGCGTACATCTTCAAAAATCGCACTCTTTGCAAGCGAGCACAAACATCGATCTTCCACTGCTGCCGTATATGTTTAAGTCTGGGAAACTCATGTGCGGAGTATGCAAGCAAAACTTTGCCGGGTTGAAGCAACTCCACTGGCACATCCTTAAGCACACCCAGGCGGGTTATATCTGTGACACCTGTGGGAAGTCCTTCACGGTACCAGGAGGCCTGGATCATCATCTCAGAAGCAGCCACAAGAACGATCACCAGTGTTTACGATGTAAGAGGTCATTCCCCACGTCGAAGTCGAGAAACGAACATGTGAAGCTCACTAAAGACTGTTGGCGATTCAGTTGCGAGCACTGTTGCGAGGTGTTCCCCTCGCTACATAAGAAACTCTTGCACCTCACAGAAGCGCACAACGTTCCTGCTAGAACCTACCCGTGCACTGAATGCCCACTAGAGTTTCCCAGGAACTCGAAACTGAGAGTTCACTTTGTCATCGCCCACACGAATAAATCTGTCGAGTGTAGCTTGTGTGACGAAAAGTTGGCAACTCAAGAGGATTTGGAGCAGCATGTGTCGTTGAAGCACACGAGGGAAAGACGGTTCCCGTGCCCGCACTGCCAGAAATGTTTCCTGCATAAGAGGAATTTGGACAGGCACATTAAGAGTGATCACGCTAATCCATCAACGATCTTCTGCTTCGTCTGTGCCGTCCAGTTTTCGGGAATGTCGGAATGGAAGACGCACGTCAAGATTCACGGGAAGAGATACGGCAAAGAGATAAACCTGGCCAGACAAAACGCTGAAGCAATAGTGCAGTACACGACTGCCCTTCCCTTCCGACTGACGGGCGCCGCGATCGACTGCGTCTATTGCTTTGACAGCTTCAAGTCACCGTCCGAGCACAGAGACCACATGCATCAAGACCACGAAACCTTCCAAGTCAAAATGGCGTTCACTAACTTCAACACGAACTGCTACTTGCGTGTCGACTGCACCGACTTGCGCTGTCGTCTCTGCGAGTCTGAGCGCTTCTCAAAAATAGACTCCATAATCGAGCACTTAACAATCGAACACCAAGTAAAGTTCTATCTCGAAGCTGGCCTTGCTCTCCTGCCAAATAAATACGAGCAGGAACGCCAAATCCTCTGCGCTATCTGCGACGTCAACCAACCGGGCTTCAGACAGCTCAGCAACCACATCTCCACACACTACCAGACGTTTATCTGTGAGAGCTGCGGCAAGTCGTTCATGACCAAGCCGGGTCTGCAGCTACACATGAGGAACACCCACACGGACCGCACGCACCGGTGCGTCAAGTGCCGGCGCGCCTTCGACTCGGTCAAGGCCAGAAGGGACCACGTGGTCGCCTCACAGAACTGCTGGGCTCACCGCTGTAAACTATGCACGGAGAGATTCCTCACGTGGAAGATGAAGCAGAGCCATTTGGTAGCCGTTCATTCCAAACCGCAGAAGACCTACCCCTGTACTGAGTGTGGAGACATATTCCCGTCTCAGATATCGTACTATCACCATTTCAAAAAGAATCACAGTATGGATTCTTTTGTGTGTGCCTACTGCGGGCAGCGTTACCCCTCTAAGTTGCGACTAGAGGACCATATCGTGACGCATACGAAGGAGAAGCGGTTTCAGTGTGCCAAGTGCGAGAAGTCGTACCCGAGGATGCGCGGACTGAGGCGGCATATGCACACGCATCATGAGCGGTGA
- Protein Sequence
- MKEHQYASVKCSKSLTCSCGERFRTSRDKRLHEVCDHPEVIEKEEEDQLRRKEQIRELKRYLSVILENTTAYAFYIAKGRIICAYCSMHVVQPSTYVAHMHDRHSSGANKLKGILSKIVQPTIKLKIECSDLKCRLCSEEFEDLTSICVHLQKSHSLQASTNIDLPLLPYMFKSGKLMCGVCKQNFAGLKQLHWHILKHTQAGYICDTCGKSFTVPGGLDHHLRSSHKNDHQCLRCKRSFPTSKSRNEHVKLTKDCWRFSCEHCCEVFPSLHKKLLHLTEAHNVPARTYPCTECPLEFPRNSKLRVHFVIAHTNKSVECSLCDEKLATQEDLEQHVSLKHTRERRFPCPHCQKCFLHKRNLDRHIKSDHANPSTIFCFVCAVQFSGMSEWKTHVKIHGKRYGKEINLARQNAEAIVQYTTALPFRLTGAAIDCVYCFDSFKSPSEHRDHMHQDHETFQVKMAFTNFNTNCYLRVDCTDLRCRLCESERFSKIDSIIEHLTIEHQVKFYLEAGLALLPNKYEQERQILCAICDVNQPGFRQLSNHISTHYQTFICESCGKSFMTKPGLQLHMRNTHTDRTHRCVKCRRAFDSVKARRDHVVASQNCWAHRCKLCTERFLTWKMKQSHLVAVHSKPQKTYPCTECGDIFPSQISYYHHFKKNHSMDSFVCAYCGQRYPSKLRLEDHIVTHTKEKRFQCAKCEKSYPRMRGLRRHMHTHHER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -