Aalb023269.1
Basic Information
- Insect
- Argyresthia albistria
- Gene Symbol
- -
- Assembly
- GCA_963457715.1
- Location
- OY735282.1:665608-672395[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.015 0.84 10.7 2.5 1 23 78 101 78 101 0.97 2 14 0.022 1.3 10.2 4.6 2 23 127 149 126 149 0.95 3 14 0.013 0.74 10.9 0.1 2 23 197 219 197 219 0.96 4 14 0.011 0.64 11.1 0.2 2 23 305 327 304 327 0.94 5 14 4.1e-05 0.0024 18.8 0.2 1 23 347 370 347 370 0.98 6 14 0.016 0.92 10.6 2.9 2 23 378 400 377 400 0.93 7 14 0.024 1.4 10.1 0.3 2 23 483 505 482 505 0.91 8 14 0.0033 0.19 12.8 0.9 1 23 526 548 526 548 0.98 9 14 0.0055 0.32 12.1 0.5 3 23 554 575 553 575 0.97 10 14 0.24 14 6.9 0.5 2 23 579 600 578 600 0.94 11 14 0.017 0.99 10.5 1.0 2 23 610 632 609 633 0.96 12 14 0.00062 0.036 15.1 0.1 1 23 639 661 639 661 0.96 13 14 0.0024 0.14 13.2 0.3 2 23 681 702 680 702 0.93 14 14 0.0008 0.046 14.7 4.8 1 20 708 727 708 731 0.91
Sequence Information
- Coding Sequence
- ATGGAACCCGAAGATTACGAGCCGGAGATTAGCAAATCACGAGCGCAAAAACCAAAGCGAGGGCTACAAAGCAGcattaaaaagaagaaaactgATGAAAATCTCGATTTGACGATAATAAAGGTTGAGACTAAAGAAAAGAATGAAGAACACAACGCCTTAGACAACCTCCTAAATCTCCTCGAGAACTCCAACACGTGTCTGTTCCACTACAACTGCGACCAAGACGAGTACCAATGCTATGTTTGCACCGACACGTTCCGAAATCTAAAACTACTCCGGTCGCACACCAAAAACACCCACAGTACCGCAGAAATGGTCATAGCAGTGCTGCATTCCGAAACCGACGGGGCCATCCTTGCAGAAATATCCCATCTGAAGTGCTCCAAGTGCAACCATTCATGCGACAGTGTTGACAACTTAATAAAACATCTAACGTCCAAACACTCGATAGTGTTGGGGAAGTTTAGTGGTGTGATACCGTTTAAAGTGGTCGCAGAGGGTTTGGTGTGTGTTTGTGGTGAACAGTTTGAGTCGTTTGGTGTGCTGCGGTCTCATTGTGTGGCGCGCCGGTGCGCGGAGGTGGGGACGTGTGACGCGTGCGGGGAGGTGCTGCGGGGGAAGGGGAAGTTGGCTGAGCATATCAGGACGAATCATGCCGCCGAAAACCGAAGCAAGTCCTACAAGCGCATCTCGAACGCAGTCGCTATAGTCAGCAACTCCAACGCCTGCCCGTTCCACTGGCCGGTTGTCCGACAGAAGCGATTCAAGTGCTACTGCTGCTCCCAACACTTCACCGAGTTCAGCGAACTGAGACGCCACCACACCGCCGAGCACGATATCGAAGCCTTCCGCAAAGAGGTGAAGCAGCAAGGAGTCACCGCTCCGTTGAAATTGGAAATTACCGGACTGCAATGTGCAGAGTGCGGCCAGGATTGTGATAGTCTGGGGAAGCTGCGGGCTCATTTGAAAGGTGTGCATGGATTTAATGCCGATGAGGATGAGTTTATGCTGCCGTTGAAGATTGAAGGTGAAGGTTACAAGTGCCTGGAGTGCGCGCGAGAGTTCTCCGGCTGGCGGGCGCTGAACCGACACATCCGCGTCACGCACACGAGCACGCTGCGCACGTGCGCGTGCGAGCAGTGCGGCAAACAGTTCCTGAGCAAGAAGAATCTGCGATATCACGTGCAGAACACGCACACGGCCTCCAACATCTCCAAGCCGACTGCGCTCCGCTCGAACACGATGACGCTCCTCGAGCACTCGAACATGACCATATTTCAACACGAGGGCGTCTCGTTCCGATGCTTCTGCTGCCAACAGTCTTACCTGAACTTCGCGCAGCTGAAACAACACTTTCACGCGCACGACACTCAAACCGTCGAGGcagccataaggaaatacatgAACAGCTTCTACTACATGAAAGTTGACATCACTGGACTGAAGTGCGATAAGTGTCAACAAGGATTTGACAACATAGATGGCCTGAAATTGCACTTGACGGATTCACATGGAGTGCAATTTTGGAGGGACGGCGAGAACTACTTGGTACCGTATTTGGTGAACGGTTGTTATCAGTGTGGGTTTTGTAGGGAAGAGTTTAGGGTGATGCAGACGCTGACTCGGCATGTCAACTCGCACACGAGCAAGGAGATATGTGAAGTGTGCGGCAGCGCGTTCTTCAATGCGACGTTCTTGAAGGCGCACAAGAGGAAGCGCCACGGCGCGATCAAGTGCGCGCTGTGTGATATAACATTTGACAGCCTCACCGCGCGGCGGAATCACAACAAGCAGCACAGAGGCGAGCTACCGAAAAGATCGCTCAAGTGCGCGTTTTGCGAGGAAGCATTCAACTCATCTGAGATGAAGTATGCACACATGAAAACGGTCCACCACTACCAGCCTCCAGAATATCCGTGCGCAATCTGCGATAGAATTTTCTACACGAAAGGCGGCTACGAAAACCACCAAGTCAACCACAATAAGGTAAACAACAGGAGGTCGAAAGGCAAACCGGAACTCAAGGCGAGCCTCTTGCCTTGCAAGTATTGCCCAAAAATGTTCTCGAAGGTAAAACTTGAAGAGCACATTCTACAGTCGCACAAAAAAGCGCACACATACACGTGCCATTTGTGTACAGAGAACTTTACGACCGCTGATCATTTGTGTCGTCATGTTGTCGACCGTCACGGACACAATAAGCCGAATTGTCCTCTGTGCAAGTTTGTGCCGAAGAGTAAACAGTTTATGTTGCTGCATCTCAAGGAAGTGCATAAGCTGGGCGATATCGACGGTATGTGGGACCTCAATGTGGGCACGCTGACCTCGAAGGACGAAGTAGCTACTGCTTGCGCTAGTATTGCATAG
- Protein Sequence
- MEPEDYEPEISKSRAQKPKRGLQSSIKKKKTDENLDLTIIKVETKEKNEEHNALDNLLNLLENSNTCLFHYNCDQDEYQCYVCTDTFRNLKLLRSHTKNTHSTAEMVIAVLHSETDGAILAEISHLKCSKCNHSCDSVDNLIKHLTSKHSIVLGKFSGVIPFKVVAEGLVCVCGEQFESFGVLRSHCVARRCAEVGTCDACGEVLRGKGKLAEHIRTNHAAENRSKSYKRISNAVAIVSNSNACPFHWPVVRQKRFKCYCCSQHFTEFSELRRHHTAEHDIEAFRKEVKQQGVTAPLKLEITGLQCAECGQDCDSLGKLRAHLKGVHGFNADEDEFMLPLKIEGEGYKCLECAREFSGWRALNRHIRVTHTSTLRTCACEQCGKQFLSKKNLRYHVQNTHTASNISKPTALRSNTMTLLEHSNMTIFQHEGVSFRCFCCQQSYLNFAQLKQHFHAHDTQTVEAAIRKYMNSFYYMKVDITGLKCDKCQQGFDNIDGLKLHLTDSHGVQFWRDGENYLVPYLVNGCYQCGFCREEFRVMQTLTRHVNSHTSKEICEVCGSAFFNATFLKAHKRKRHGAIKCALCDITFDSLTARRNHNKQHRGELPKRSLKCAFCEEAFNSSEMKYAHMKTVHHYQPPEYPCAICDRIFYTKGGYENHQVNHNKVNNRRSKGKPELKASLLPCKYCPKMFSKVKLEEHILQSHKKAHTYTCHLCTENFTTADHLCRHVVDRHGHNKPNCPLCKFVPKSKQFMLLHLKEVHKLGDIDGMWDLNVGTLTSKDEVATACASIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -