Aalb021050.1
Basic Information
- Insect
- Argyresthia albistria
- Gene Symbol
- -
- Assembly
- GCA_963457715.1
- Location
- OY735277.1:6906383-6909142[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.9e-05 0.0011 19.8 3.3 1 23 327 349 327 349 0.98 2 12 6.4 3.7e+02 2.4 0.4 5 14 389 398 386 402 0.85 3 12 0.0057 0.33 12.0 2.0 1 23 419 442 419 442 0.97 4 12 0.0012 0.068 14.2 1.3 1 23 448 470 448 470 0.98 5 12 0.00032 0.018 16.0 0.6 2 23 492 514 491 514 0.95 6 12 0.0014 0.079 14.0 4.5 1 23 518 540 518 540 0.99 7 12 0.86 50 5.2 0.0 2 23 563 585 562 585 0.89 8 12 2e-05 0.0012 19.7 2.4 1 23 597 619 597 620 0.96 9 12 0.0035 0.2 12.7 1.7 3 23 637 657 636 657 0.98 10 12 0.18 11 7.3 0.7 1 23 663 685 663 685 0.94 11 12 0.25 15 6.8 3.4 1 22 691 712 691 715 0.91 12 12 0.00011 0.0065 17.4 3.3 1 23 762 784 762 784 0.97
Sequence Information
- Coding Sequence
- ATGGCGTCCCATAGCATGCAAGCCATCCTAGGAGAAAGCGACACAGCAGAACCTGTGTCCTCAACCAACTCTGGAAACATCAAACAAGAATTTGACATCAATATGGAAGACTTTAGTATAAAACTTGAAACCGACCAAACCACAGAGCATAACACTGCCAATACAGTATTAGAAAACACCCAACCATTTACTGCCAATACTGATAAACCAgatgatattttaaaaacactGGTAGATAAGATACATCAGGACATtaaaaatgaaatagaaatcGCCAGTAATGATGAGGGCATTGGAGTCATCAGCAGAGTCTTCTCCAATGTTGAACAAAGTATTTCTGataaaagtgaaataaaacTTGAGTTCCCTACAAATCTAGATGCTATTGACTCACCAACTAATGTTGAGTCTCATAAAAGGGATAATGTTGACAgtacaaaaatacaatataatacaaGTACAAATGGAATAGAAGTTAAACAGGAGGTAGACAACAGTATTGTTTCATATGATTATCCACAATTTGACTCAACAAGCATGGACAGCAGTGAAGGCAGTGCAATGGGAATGGTGGATGCTTCTCTGCAGCAGATGATGGAGGTTAAAACTGAAATAGATGAGGAGGATGATGATGATCACAGAGAGCCGTTTCAAAATGTTGATGTGAAACTAGAGCCAGACTTCACTGTCACCGAGACACACCTAATATCTAACAAGATGATCAACACTACCTCGACCATCACTCACCCGCAAGATGGAGTCATTGAGTCACAGACCACTCATACACTAGTCATGGAGATACGCCCCATGACCACCTCTTCACCATTCAAGATATCCCATACACCAGACATGATACTACCCACATCGGAAAACGAAAAGCTAGAAGATTTCCAGTTGAATTCTATAACTGGAGATGTCTTGCCTTTAGAAGCATATGGATTGCTCGGAACCAGCAAATTCACTACAAATATGAACTTGTATTACTGCCCCCGGTGCCCCAAGGAATGTAAAAGCAAATCTCAACTGAGTAAACATCTAAAAGTTCACGCTACTATAGATAACTACGCTAAAGGAGCCGAAATGAGGAAGCAAAAGATAATTGAAAATGCTGAAAGAAAACGACAGATCAAATTACAAGTTGATAATAAGGATCTTTATCAGTGTACGTGTGAGAAGACTTTTAGGAGGAGAAGCAGAATGGAGACGTGTCTAAGATCACATGACGAGGTCCAACAAACTTGTAGTAGCTTTAAATTCAGTTGCTTGTACTGCGCAAAACAATGTGAGAACAAAGACGATCTAGTCGCGCACAGAAAGAGAATGCACAATACGAGAAAGAAATTCCCTTGCAAATTCTGCCCATCCGACTATAATACTAGGAAAGAACTCTTCAAGCATCTAAGAATACACCAGAAAGTACAATTGATGGAATACAAGGTTATATCAGAAAATGTTGAAGGGAATCAAAAGTTAAAATGCTTTCTGTGTAATAAATCGTACACGGAGCTATCAGAACTCAAATCTCATGTCATGAGCGGTCACACAGAGCCTTATAAGTGCCAGCATTGTAAGGAAAAGTTTTCGAAATTAACAGAATTCGCGACGCACGCGAAAACTCACCCAGATATTAAAGGGCAGGCAGTGATAGATGTCTTGGAAGCGTTTTCAAAGCTTGCACAAGCATGGAAGTGTATAGATTGCGATATACAATTCAAAGGACCCGACGAAATGGCTCTACATCAGTTAGACAAACACAAAGACATCAAGGGGACTCAGGAATCGGAACAGTTTCAGTGTGAAGACTGTCGTAGAGCATTTGCCAGCAATAAGAGCCTAAATACACACAGAAGAGCACACCACAACATTGAAGATGCCAGTGAGTCTACAAGCATTGAACAAGGACTATTATGCGTGTATTGCCGTAAGATATGTAAAGACGAGAACGCGTTAACGTCCCACATGAGACTACATTCCTCAGACAGAAAGTACGCCTGTAAGTTCTGCGATTTTAGATTTGCGACAATCGAAAAGAGAAAGACGCACGCGGAAATTCACACGGGGGATATGAGATACGTCTGTTTCATCTGCGAGTACCAGTGCAGTTCGGAAACTAGGTTGAAGAAACACAAGCAATCGGCCAAGCATTTGAGTATGAAAGACTATCTCTTGACTGGTAAACCGATTCCTGCGCCACCGCCTACAGAGGAGAAGACAAAGGAGCAAGAGTGCGGTGTGAAGAAGAGAAAGACTTCGGAAGGGAGTGAAAGAGAGAGTTCTGGCGAGTATGCGTGTGATGTGTGTGGAAAGAGGTTTTCTAGCAAAAAGAAGATGCTGCATCACAAGTTGACGCACCCATTTATAGAGTTCCCGAATGAAGATCAGCCGTCTAGGATATTTTTCAAGTAA
- Protein Sequence
- MASHSMQAILGESDTAEPVSSTNSGNIKQEFDINMEDFSIKLETDQTTEHNTANTVLENTQPFTANTDKPDDILKTLVDKIHQDIKNEIEIASNDEGIGVISRVFSNVEQSISDKSEIKLEFPTNLDAIDSPTNVESHKRDNVDSTKIQYNTSTNGIEVKQEVDNSIVSYDYPQFDSTSMDSSEGSAMGMVDASLQQMMEVKTEIDEEDDDDHREPFQNVDVKLEPDFTVTETHLISNKMINTTSTITHPQDGVIESQTTHTLVMEIRPMTTSSPFKISHTPDMILPTSENEKLEDFQLNSITGDVLPLEAYGLLGTSKFTTNMNLYYCPRCPKECKSKSQLSKHLKVHATIDNYAKGAEMRKQKIIENAERKRQIKLQVDNKDLYQCTCEKTFRRRSRMETCLRSHDEVQQTCSSFKFSCLYCAKQCENKDDLVAHRKRMHNTRKKFPCKFCPSDYNTRKELFKHLRIHQKVQLMEYKVISENVEGNQKLKCFLCNKSYTELSELKSHVMSGHTEPYKCQHCKEKFSKLTEFATHAKTHPDIKGQAVIDVLEAFSKLAQAWKCIDCDIQFKGPDEMALHQLDKHKDIKGTQESEQFQCEDCRRAFASNKSLNTHRRAHHNIEDASESTSIEQGLLCVYCRKICKDENALTSHMRLHSSDRKYACKFCDFRFATIEKRKTHAEIHTGDMRYVCFICEYQCSSETRLKKHKQSAKHLSMKDYLLTGKPIPAPPPTEEKTKEQECGVKKRKTSEGSERESSGEYACDVCGKRFSSKKKMLHHKLTHPFIEFPNEDQPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00163675;
- 90% Identity
- -
- 80% Identity
- -