Aalb022344.1
Basic Information
- Insect
- Argyresthia albistria
- Gene Symbol
- PLAGL2
- Assembly
- GCA_963457715.1
- Location
- OY735280.1:1885193-1904513[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00058 0.034 15.1 1.3 2 23 273 295 272 295 0.94 2 11 0.00041 0.024 15.6 0.7 1 23 302 324 302 324 0.97 3 11 0.31 18 6.6 4.9 2 23 329 350 328 351 0.93 4 11 0.012 0.7 11.0 2.1 1 23 355 378 355 378 0.98 5 11 0.00012 0.0071 17.3 3.8 1 23 381 404 381 404 0.97 6 11 0.0007 0.041 14.9 1.2 1 23 407 430 407 430 0.96 7 11 0.039 2.2 9.4 0.4 3 22 440 459 439 463 0.92 8 11 0.0045 0.26 12.3 1.8 1 23 470 493 470 493 0.96 9 11 2e-05 0.0012 19.7 3.3 1 23 499 522 499 522 0.96 10 11 3.1e-05 0.0018 19.1 1.6 1 23 531 553 531 553 0.96 11 11 0.0049 0.28 12.2 0.2 1 23 559 582 559 582 0.96
Sequence Information
- Coding Sequence
- ATGGCGACACAGTACAGTGATTCCTTCTACTCATCACTGAAGTGCCGGACGTGTCTAAGTGTCGGTCGCAGGCTGCGTCCGCTGGCCACGTATTACCATGTCTTCAGTTGTGTTATGGGCGAGAGCAATATGCTGCACCCGCCACACGCGCTCATCTGCTGGGAGTGTGAAGCTGTGTTGCGTAGCGTCGCGCGGTTCCGGAACAGAGTGTACACCGCCAACAGTGTGCTCGCGCAGacACACCACGCGTCGCTATCAAGTTTGAACATCACCGCACAGGCAACGACATCTAGCGACGAAGAAGCAAACACAATAAATCAAAAGCAAGATGGCGGAGTCATCCAAAGAGCTACGGAGCTGTTAGCAGATGAATACGACTATGCTGATGATCCATTCCTGAACTCGGAAGACAAAGACAAGCCATCTGTTAGTGAAATAAAGGTTGAGACAGATCCCTGCGATGATTGGATAAACGACGAAACAGTATTTGTTAAGTCCGAAATACTGGAAATCGAGCCAaaggtaaaaagaaaaatagAGAGTGTTGAGCCAAAGGCAAAAAGAAAAATAGAGAGTGTTGAGCCAAaggcaaaaagaaaaaaagaaattgAAGGTCACGTGTCAGATGCGAAAACTAAAAGTAAGACGAAACGGGCGCTGAAAAAGACACTCGAAAAACCAAGATACAACTTCGTGAAAACTACTGACGATACTAAAGAGGAGGATATGTATACGAGAGTTGCCATCGACGAGACAGAGTTAGCGGAGTGTCGTGCGAGAGAGAGGGACAGTGAGTTCttcaagaagaaaaagaagaagtgcGAAGATTGTCTGCTATATGGATTCCGGAGTAAATCAGACCTGCAGCGGCATATGAACCGTCACACGAAGGCGGCCGGCAACTACGCGTGCGATGTGTGTAAACTAAGATTTGCGAAGCAGCAGCACCTCGCCGCTCACAGAGAGAGTCACCTGCTGAAGCTGGTGTGCCGCGCGTGCGGCTACGCGGGCTGCACGCGCGGGCACATGTCGCGGCACTACCGGCGGCACCACGGCAACACGTACCGGTGCCGCAAGTGCGCGCTGCTCTTCgcTCGTCGCAGCGAATTCACGGATCACTACAAGCGGATGCACGAGCGGTTCATTTGCGATCACTGCGGAACCCAGTTCAAGATGCGCTACATGATGATCAAACACATGCGGAAGCGCCACCTAGCGCACCGATGCGGCGTGTGCGGCAGCCGGTACTCAACCCGCTACGGGCTGAAGGTGCACCGGCTGAGAGCGCACTCAAGCGCGGCCGCCGGCGCCGCCTACTGCGTTGAGTGCGACATGCAGTTCCCGAACGAGTTTAAATACAAGAATCATCTGAAGACAGGTGCGAGACACAAGCCTCGAATAAAGAGGTTCGCGTGCACGCAGTGCGACAAGATGTTCTGGAAGCAGTGCGACCTGCGCGCGCACCGCGACACCGTGCACCTCAAGATCTGCCGCTTCCGCTGCGAGGACTGCGGACAGAGGTTCGGTCGCAAGTGCAACCTGCGCGAGCACCGGCGCGCGCGCCACGAGCGCCGCTCGCCGAGCCGCGAGCACGCGTGCCGAGTGTGTGCACGACCCTTCACGACGAAACAAAGCCTCAAGCGACACATGATGATACATACGGGCGAGCGTCCGTTCGTGTGCGCGCTCTGCTCGGCTCGCTTCAACCAGCGCTCGGCGATGAGCACGCACGTGAGGAATGTGCACaagccaccgccgccgccgccgccgccgccgcatcaCTCCTAG
- Protein Sequence
- MATQYSDSFYSSLKCRTCLSVGRRLRPLATYYHVFSCVMGESNMLHPPHALICWECEAVLRSVARFRNRVYTANSVLAQTHHASLSSLNITAQATTSSDEEANTINQKQDGGVIQRATELLADEYDYADDPFLNSEDKDKPSVSEIKVETDPCDDWINDETVFVKSEILEIEPKVKRKIESVEPKAKRKIESVEPKAKRKKEIEGHVSDAKTKSKTKRALKKTLEKPRYNFVKTTDDTKEEDMYTRVAIDETELAECRARERDSEFFKKKKKKCEDCLLYGFRSKSDLQRHMNRHTKAAGNYACDVCKLRFAKQQHLAAHRESHLLKLVCRACGYAGCTRGHMSRHYRRHHGNTYRCRKCALLFARRSEFTDHYKRMHERFICDHCGTQFKMRYMMIKHMRKRHLAHRCGVCGSRYSTRYGLKVHRLRAHSSAAAGAAYCVECDMQFPNEFKYKNHLKTGARHKPRIKRFACTQCDKMFWKQCDLRAHRDTVHLKICRFRCEDCGQRFGRKCNLREHRRARHERRSPSREHACRVCARPFTTKQSLKRHMMIHTGERPFVCALCSARFNQRSAMSTHVRNVHKPPPPPPPPPHHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -