Aalb019433.1
Basic Information
- Insect
- Argyresthia albistria
- Gene Symbol
- -
- Assembly
- GCA_963457715.1
- Location
- OY735274.1:4794424-4803486[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0037 0.21 12.6 1.8 2 23 66 87 65 87 0.96 2 12 0.37 21 6.3 1.4 3 23 95 116 93 116 0.86 3 12 0.0019 0.11 13.6 0.1 2 23 125 147 124 147 0.94 4 12 0.00014 0.0079 17.1 5.4 1 23 153 175 153 175 0.97 5 12 7.4e-06 0.00043 21.1 0.7 1 23 181 203 181 203 0.96 6 12 0.53 31 5.8 0.2 1 21 209 229 209 230 0.93 7 12 0.18 10 7.3 3.9 1 19 250 268 250 273 0.92 8 12 1.1e-05 0.00062 20.6 1.6 1 23 586 608 586 608 0.98 9 12 7.2e-05 0.0042 18.0 2.8 1 23 615 638 610 638 0.96 10 12 0.0055 0.32 12.1 0.4 2 23 647 669 646 669 0.96 11 12 0.0012 0.07 14.1 1.4 2 23 676 699 675 699 0.90 12 12 0.0005 0.029 15.4 0.5 1 22 705 726 705 726 0.96
Sequence Information
- Coding Sequence
- atggACTCAAATTTATCGTTCTTCAATCTCCCTTTTGGCGACACAGACAACGGGGATCTAGCAGCTATCGCCAAGAATGACTTCCCTCCGCCCCTGGCCACTGGTTCCCTCCTGGAGGCTGATGACATCCTGGATCAGTTCCTCTCGGCTGAAGGGCCCCTGGAAAGCCCTAACCTGAGTGGGCCCTCTTCACTACATTGCGAAATATGTCAGAAGAAGTTCGAGAACGCTAAGAAGTACTACGGTCACCTCAGAGTACATTCTAAGGATGCCTCTTGGAGCTGTGatcTTTGTGCCAACCAGAAATTTTCAACAAAACAGCAATATCTCAAGCATCGTTCAACTCATAACCCCATAAGTGAGAGAGTGTGGAAATGCCCAGAGTGTCCAATAGCATTTGATACACTGAAGAGGCTACGGGAGCACATtgatataaaacataaaaaagaaaGGGCACATAAGTGTGATAAGTGTGATAAAtcatttcataaagttagtGATTTGAAGAAGCATCAAGATGTGCATAGTGCCGCGCGCCGGCACGCGTGCGCAGAATGCGCCGCGCGCTTCACTGACAAGTCGAACCTGAAGCGGCACATGGCGACGCACACGCGCGAGACCAACTACCGGTGCAGTGGCTGCGGGAGCTGGTTCCAGCAGCTGGCCTCCCAAAAGCGGCACATGTTGCGCTGCCCGCGGTACATCAGCTATAGCGGTGCCGGCGCCGGCGACGCGATGCCGCGACAGCACCACTGCCGGCTCTGCGGGCTCAGCTTCCCTTACAAGAGCGCTCTGGCTGAGCACTGCGTCAGATTCCATCCAAGCCCagaaaaagataaagataaggATGACAAAACTCCAATCAATACCGAAGCAACATATGAGAAAATTGTCGATGAAATCCTTTCTGTAGAAGACGAGTTTTCCATCCATCATGCTAACAACCAAACTGAGATACTAGCAAACATAGACAAAAACCAAAACTTCGACCAGAATGAACCAAAAAACAACGACAGTCTCATGCATATAGAATTCCTCAAAGATATGAACCAACTACACACTTTAGACGATGAACTATTCTACAACGATATAGACTTCGACAGCCTCAATCTAAACTCCAGCCAAGTGTTTAACAGAAGTGATATAGACTATGGAACTCAGGAAAGAAATGAAATATTGTTTGATTTCGCAGAATGCGGACGGAGCATAGACCAGGATCTCATGAATGCGTTATACCAAGTCAGAGCAGAACATTTACCAGACGAACTGTTGAATATTAGCAATCCAATAACTAATAGTAATACCCCAAGCAGTACTGAAGCATTAATAGCAAATAATGTGCTAGTAAACGAATGTGCGACCATATTTGAGAGCGATGTTGATTTGGAAGCAAGCACGAATTTAGCGATGAACCTAAACCAACTCATAGGCGAGAATAGCGTACATTATGTGTCTACAGAAGACGACGATACTTTCATTATTAGTCTCGACAATGGTATTGATGCTGAAAAACTGACTGACTTATTGAACATAGGCGTAGAACTGGCACAGGACGATTATCAGCCAAAGGATATCGGAAATATAGATACATTTCCTATCGATGTTTTGAAACAAGATCTTGTGAGTAAAGAACCGACTGTAGACTCAATAGTTCTCGAAATGGCTGATGTAGCGACAAATCATGCAGCCGAAGATGAACAAAGCAAGGAAAATGTGGTGATAAAACCTAAAGTGAAGTCAAAAAAGCAAGTTCTTTacgtttgtagaacttgtaagAAGGTTTTCAAGAAGAAGGATAACTGGCGATCTCACATCGCAACCCACGATTCGAACCTGCGGCGCCACCGTTGCCGAGTGTGCGGGCTTCGCTTCTCATACCGCTCGTCGCTCAACAAGCACACAAGCAAGGCTCACTCCCCGCGCGTGCTCCCAGCCGTCACATGCCGGCAGTGCGCGCGACAGTACCGCCAGCCGTGGATGTTGAGGCAGCACATGGAGCGGGACCACGAGCGTCTGACGCCGTTCGCGTGCGGCGAGCCGCGCTGCGGGAAGACCTTCTACAAGAAACACGACCTGGATGTCCATACGCGCTACCACACGGGAGCGCGTCCCTACGTGTGCGACATCTGTGAGCGGAGCTTCCTCAACGTGTCCCACTTGAGGCGCCACGAGCGCACCGTCGACTGCACTAAGCGGGCGCGCATGAATAGAGAGGACTTGAAGAACAGTTGA
- Protein Sequence
- MDSNLSFFNLPFGDTDNGDLAAIAKNDFPPPLATGSLLEADDILDQFLSAEGPLESPNLSGPSSLHCEICQKKFENAKKYYGHLRVHSKDASWSCDLCANQKFSTKQQYLKHRSTHNPISERVWKCPECPIAFDTLKRLREHIDIKHKKERAHKCDKCDKSFHKVSDLKKHQDVHSAARRHACAECAARFTDKSNLKRHMATHTRETNYRCSGCGSWFQQLASQKRHMLRCPRYISYSGAGAGDAMPRQHHCRLCGLSFPYKSALAEHCVRFHPSPEKDKDKDDKTPINTEATYEKIVDEILSVEDEFSIHHANNQTEILANIDKNQNFDQNEPKNNDSLMHIEFLKDMNQLHTLDDELFYNDIDFDSLNLNSSQVFNRSDIDYGTQERNEILFDFAECGRSIDQDLMNALYQVRAEHLPDELLNISNPITNSNTPSSTEALIANNVLVNECATIFESDVDLEASTNLAMNLNQLIGENSVHYVSTEDDDTFIISLDNGIDAEKLTDLLNIGVELAQDDYQPKDIGNIDTFPIDVLKQDLVSKEPTVDSIVLEMADVATNHAAEDEQSKENVVIKPKVKSKKQVLYVCRTCKKVFKKKDNWRSHIATHDSNLRRHRCRVCGLRFSYRSSLNKHTSKAHSPRVLPAVTCRQCARQYRQPWMLRQHMERDHERLTPFACGEPRCGKTFYKKHDLDVHTRYHTGARPYVCDICERSFLNVSHLRRHERTVDCTKRARMNREDLKNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00163564;
- 90% Identity
- -
- 80% Identity
- -