Aalb023255.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Argyresthia albistria
Gene Symbol
-
Assembly
GCA_963457715.1
Location
OY735282.1:568692-577820[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.002 0.12 13.4 0.9 1 23 196 218 196 218 0.98
2 16 0.25 15 6.8 0.6 2 23 246 268 245 268 0.87
3 16 0.0068 0.39 11.8 0.7 2 23 289 311 288 311 0.96
4 16 0.08 4.7 8.4 7.7 1 23 316 339 316 339 0.96
5 16 0.054 3.1 8.9 6.4 1 23 344 367 344 367 0.97
6 16 0.61 35 5.6 0.3 2 23 370 392 369 392 0.95
7 16 0.61 35 5.6 0.4 2 19 398 415 397 418 0.92
8 16 0.00081 0.047 14.7 0.4 1 23 469 492 469 492 0.96
9 16 0.0021 0.12 13.4 0.2 2 23 521 543 520 543 0.93
10 16 0.013 0.74 10.9 0.7 3 23 567 589 565 589 0.96
11 16 0.0013 0.078 14.0 0.3 3 20 596 613 594 617 0.92
12 16 0.019 1.1 10.4 0.7 1 23 622 645 622 645 0.98
13 16 0.00026 0.015 16.2 0.6 2 23 651 673 651 673 0.94
14 16 8e-05 0.0047 17.8 1.8 1 23 677 700 677 700 0.97
15 16 0.00013 0.0076 17.2 0.9 2 23 707 728 706 728 0.97
16 16 0.057 3.3 8.9 1.4 1 23 734 756 734 756 0.97

Sequence Information

Coding Sequence
ATGGAGTTCGGCGCAGTATTATTGAAAGATATGGTGGGTCTGTGCCGATGTTGCCTTGCGGAGGGATGCTTCAAGGATCTCTCATCGGAATACACCAGTTACAACGGCAAGGAGATATACGCGGAGATGCTGCTAGAATGCTACGATATCTCTCTTACTCAACGGACAGACTCGGCCGGTCCCCTCGAGCAGTTCATCTGCGAGGCGTGCATCGCCCGGCTGAGAGACGCGGCTCAGTTCAAGCGGCAGGTCATTGAGACGGAGGTGCGCTTCCTCGACATGCTTGACCAGGGGCTGCTGAAGCCAAAAGTGGAAGAGACCGAGCTTGACTTGAAGACGGAAGCAGAGATACTCTCAGACGAGGACATGGGGCAATTCAACAATTTGGACTATGAAGAAGacagCGACGACGCGCCCCTGCGTCCCCCCGCGCCCCCCCGCAAGAGGAAGGGCGCCGACGCGCGCGGGAGACGCAGCAAGCTACAGAAAGGTGCAAACGCGAGGAAGACATTGACCCGCAAGCGTACCAACCTTCAGATAATATTCAACAACACGACTGTAATACCGTTTAGATGGCGCGGGAAGTTCCGATGTTTCTACTGCGGGACGGTTGTCCAAGACTATAACGAACTGACTATGCACACAAACACTCATGGAGACTGTTCCATAGAAGATTCCGGTTTGAAAGCGGTCAAAGGGTCGAGTCGGGAAACCAAAATTGATATCTCTAAAATGACTTGTAAAGTTTGCGACGAAACTTTTACATGTTTTGACGACGTTGTTACGCATTTGATAGTCGAACACAAACTGGAATATGACACCGACGAGGAAATGGATTTGGAATGTTTTCGGTTAGTCGATTTAAGTTGTTACAAGTGTTTGGAGAAGTTTACCTATTTCGGTTACCTGCTCTCTCATATGAACACCGCTCACCCGTTAAACTGTTTCTCGTGTGACAGTTGTCATCAGGAGTTTAACAAGAAACGACACCTGTTTTATCATATCAAGTACTATCACAGGGAAGGCGGGTATCAGTGCGAGTACTGCTCACATCACTTCAGAACTCTGTACATTTTAAGAAAACACCAGGACAAAAGTCACTTCACGAAATGCGACGTGTGTTCTTTGAAATTGCCCACCGCGATCTTAAAACAAAAACACATGAAGGAGGAACATCCGGAAAACGGTCTTAAATGCGAGACCTGTTCCAAACAGTTACAAACGAAGCAAGGTCTCAGAGTGCACTCTCTGAAATGTAGAACGCAAAACGCGACTTACGACTCCGCTgacgagaattttgaagacggTACTGTCAAACGGGAGATGATAAAAcagatcaaacaaaatatagtcTCAATCGTAAACATGTCTACGGTAATACCGTTTAGTTTCTACAAGAACAAATTCAACTGCTTCTACTGTTCGGAAGATTTCATCGATTCCGATGATTTGAGAGAGCACACCACGACGGCGCATCCAGTTTGTGACATGAATACGAAATATATAAAGAAAACCTGCCGGCCATCCGTAATGTCCGTCAAAATGGACATTTCGTCCCTCGTCTGCAAAGTGTGCTACGAAATGTTCACAGACCTAGACTCGTTGCTGCAACATCTGGTCTCAAAACACGACACATCCCTACACGAATCGCTGAAAAGTTTCATACAGCCCTATCGATTGGTCAAAGACCGTATGGCATGCCCGCATTGTCCAACACAGGTCTTTAGATTCTTCAGCACGCTGCTGAGGCATATAAACTCGGCGCATACGAATAATAACATCATTTGCGCATACTGTGGCCGGGCTTTCAGGAAAGAGCACCTTTTAAGGGTGCATATATGGCGTAATCACAAGGAAGACCAATTCAAGTGCAGCATATGCCTAGAAGAATGCTCTATGCCTTCTAGACTCTACATGCATATGGCGACAGTGCATGGTGTCAAAGCAGCCAAATGCTCTAAATGCGGTGAACGTTTTGCAACGCAGTACTTGCGACAAAAACATATGATCGACGCTCACGATCTCGGCTACAACTGCAGTTACTGCAACAAACTGTTTGTGAGAAACTCCTTCATGAAAGACCATATAAGGAGGGCGCATTTGAAGGAGAAGAACGTGCAGTGCAACGTGTGCGGAATGaagttttttaataatatccTGTTGAGAAATCACATGTTCAAGCATAGTGGCGAGAAGAGTTTCCACTGCGACGTCTGTGGCGAGCGGTTCCTGTGGCGCAAGGGACTGGTCAGGCATATGAAAAGGCATAATACATAG
Protein Sequence
MEFGAVLLKDMVGLCRCCLAEGCFKDLSSEYTSYNGKEIYAEMLLECYDISLTQRTDSAGPLEQFICEACIARLRDAAQFKRQVIETEVRFLDMLDQGLLKPKVEETELDLKTEAEILSDEDMGQFNNLDYEEDSDDAPLRPPAPPRKRKGADARGRRSKLQKGANARKTLTRKRTNLQIIFNNTTVIPFRWRGKFRCFYCGTVVQDYNELTMHTNTHGDCSIEDSGLKAVKGSSRETKIDISKMTCKVCDETFTCFDDVVTHLIVEHKLEYDTDEEMDLECFRLVDLSCYKCLEKFTYFGYLLSHMNTAHPLNCFSCDSCHQEFNKKRHLFYHIKYYHREGGYQCEYCSHHFRTLYILRKHQDKSHFTKCDVCSLKLPTAILKQKHMKEEHPENGLKCETCSKQLQTKQGLRVHSLKCRTQNATYDSADENFEDGTVKREMIKQIKQNIVSIVNMSTVIPFSFYKNKFNCFYCSEDFIDSDDLREHTTTAHPVCDMNTKYIKKTCRPSVMSVKMDISSLVCKVCYEMFTDLDSLLQHLVSKHDTSLHESLKSFIQPYRLVKDRMACPHCPTQVFRFFSTLLRHINSAHTNNNIICAYCGRAFRKEHLLRVHIWRNHKEDQFKCSICLEECSMPSRLYMHMATVHGVKAAKCSKCGERFATQYLRQKHMIDAHDLGYNCSYCNKLFVRNSFMKDHIRRAHLKEKNVQCNVCGMKFFNNILLRNHMFKHSGEKSFHCDVCGERFLWRKGLVRHMKRHNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-