Aalb023322.1
Basic Information
- Insect
- Argyresthia albistria
- Gene Symbol
- -
- Assembly
- GCA_963457715.1
- Location
- OY735282.1:1458958-1462479[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.4 23 6.2 0.7 3 20 12 29 10 33 0.87 2 24 0.2 12 7.2 0.1 2 23 54 76 53 76 0.94 3 24 0.002 0.12 13.4 2.2 1 23 81 104 81 104 0.97 4 24 0.18 10 7.3 2.1 1 19 109 127 109 132 0.83 5 24 1.3 75 4.6 0.2 2 23 135 157 135 157 0.84 6 24 0.058 3.4 8.9 2.4 1 23 220 243 220 243 0.89 7 24 0.07 4.1 8.6 0.1 3 23 272 293 270 293 0.91 8 24 0.082 4.8 8.4 0.7 2 23 316 339 315 339 0.96 9 24 1.7 99 4.2 0.1 1 13 344 356 344 358 0.88 10 24 0.29 17 6.7 1.5 1 23 391 413 391 413 0.98 11 24 0.0045 0.26 12.3 0.0 2 23 437 459 436 459 0.93 12 24 0.017 0.97 10.5 0.4 2 21 480 499 479 500 0.93 13 24 0.081 4.7 8.4 1.8 1 23 507 530 507 530 0.93 14 24 0.035 2 9.5 4.0 1 23 535 558 535 558 0.96 15 24 0.0038 0.22 12.6 0.1 2 21 587 606 586 607 0.94 16 24 0.027 1.6 9.9 1.9 1 20 649 668 649 672 0.94 17 24 0.88 51 5.1 0.1 2 23 700 722 699 722 0.93 18 24 0.0054 0.32 12.1 0.0 3 23 746 767 744 767 0.95 19 24 0.0004 0.023 15.6 0.1 2 23 773 795 772 795 0.94 20 24 0.53 31 5.8 1.6 6 23 804 822 801 822 0.93 21 24 0.0027 0.16 13.1 0.3 2 23 828 850 827 850 0.96 22 24 0.00014 0.0084 17.0 4.0 1 23 854 877 854 877 0.98 23 24 0.0017 0.1 13.6 1.3 2 23 884 905 883 905 0.95 24 24 0.067 3.9 8.7 1.6 1 23 911 933 911 933 0.95
Sequence Information
- Coding Sequence
- ATGGAAGTCAAGCTAGATGTTTCCGAAATCAACTGTGAGCTGTGCCATGAGAGCTTCAACTCTTTTGAAGAGATATTACAGCATTTGGGCTTCAAACATAATCTAGTTTACGACTTCAAAGTTGCAGCGCCATTGGAAACCTACAGACTATCGGATCTCAAGTGCTTGGTATGCGGTTTGGTAGCCAGGAACTTCATTAATCTAGTCACACACACAAACCTGAACCACCCGAAGAACAGCTACCCCTGCGAGCATTGCGGACAGCAGTTTAACAAAACGAGAGACCTGGACAATCACAAAAGAAACTTACACAAAGAAGGCGGTTACACTTGTGATTCTTGCAACGAATCCTTTTCCACCAATCAGAGATTACGCTTCCATTTCTTAAACACGCATTTAGCATCCTGCGAGATTTGTCTCAAGCAATTCTCAACGCTAGAGATTAAGAATAAGCACATGGCGGCGGCGCATAGTGATCTCAGGCTTGGACACAAACACGAATACATACAAGAGGAGATACCCGACGAAAGCGATCTGTTGGAAGCTAACTTCCAGGATTTAGCTCAGAGGAAAGAAAAGAGTAGGATGAATAGAGCTAACATTGCCATCATTCTGAATATGTCCACGGCCATGCCGTTCAAATACTTTAAGAATCAATATCTCTGCTTTTACTGTCCCAAGTATTTCAATGAATGCGATGATCTCAAAGAACACACAGTTAATTCTCATGTAGCGTATAACACTAAAGACAAATGCACTAAAGCGTTGAAAGGAACCGAGTTCTGTATCAAACTAGACATCTCTTCTTTAGCTTGTAAAGTCTGCTTTGAACCATTCGATGATTTAGATTTGCTTATTGATCACTTGATATTTAAACACAACGCGAAATACGATAGAACTATAACCGGTATCACTCAACCCTTTAAACTAGCCAGGGAGAATATGACTTGTCCGGTTTGTAAAATGGAGAACTTTAACTACTTTGGAACTTTGCTTCGTCATATGAATAAGAATCATAGTAATAATAAATTCATTTGCGACAACTGCGGCGAAGGTTTTGATAATAATCTGGACAGAACGGACTCAGATAACACAACAGTGCGTCGAAGGGATAACCTGGAAGGCTTATTCAATAACACAACCGTTATACCGTTCAAATGGCGGGGGAAGTATAGATGCTTCTACTGCGCAGAGGATATTGTAGACTATAGAGACTTTAGAAAGCATACCAAGTCACACAAGATCAATTTAGGACACCACGACCCGTTCAAGAATATTAAGTCGATAAAAATCGACGTATCGTTCGTAACATGCGATATTTGTAACGAATCCTTCACAAATGTGGACGATATAATCGCACATTTGGTAGTTAAGCATAAGTTCGAATGTGATAAAAATCTAAGTCACAATGTTATCCCTTATAATTTAAAGAATCTTAGTTGTCCGAATTGCAGCGAACGCTTTAAGTTGTACAAAGATTTGCGCACTCATGTTAATCGATGCCGGGCGACGAGCTTGTACCAATGCGACCAGTGCCCTCAGAAATATCACAGGAAGCGAGACTTGGCGTTCCACATAAAAGATATCCACGAAAAAGATGGGTACACCTGCAAATTCTGCACCGACTCTTTTATAACGCATAGTAAGCTGAAGTTGCATGTCAGAGATCGTCATATCACTGTGTGTCACTTCTGCTTTGAGAAACACCCGACGCCCGAGTCAAAACGACGCCATATTGTCGCGATGCACAAAAACAAGAAGTGTCCGCGATGCGCCAAAGTTTTCGTCTCAAAAGTAGGTCTGGCAAATCACCTGAAAAAATGCATAGTCAAACCGGAGAAAGCCGAAGCCAAGCCGAATTCTGATGCGAAGCAAATCCGTGAGAACATCGTCAGTGTACTCAATATGACAACGGCAATGCCATTCAAGTTCTACATGAATAGATTCCGTTGCTTCTATTGCACGAAGGATTTTACAGACCACGAGCCCTTACAGGAGCATACTTGGTCAGAACACCCCACGTGTGACGCTGAAGAAAGAAGCCTAAGACTAGTCCGAGGAAAGGATCCAGTCGTAAAAATCAATATAGCATCTCTATCATGCAAAATATGTCTGGAATCCTTCCCAGAATTCGAAGCAATAACCGATCACTTAATCAAAAACCACAAGACAAACTACGACCAGACTGTCAAAAGCGTATTTATGTCCTTCAAACTCGTGAAAGACAACATGGCCTGTCCAATTTGCGCTGAGGTGTTCAGATATTTTGGAAAGCTACTCAGTCATATGAACGAAGTGCATACGAACAATAATATCGTTTGCGTCTACTGTGGCCAGACATTCAGAGGACAACCGAACTACCGAGCTCACATCTCGTACTACCACAATGAGGACAACTTCAAATGCTTCTGCGGAGAGAAGTTCGAAAACGCAATGAAACTACGATCTCATAAGAGCAAATCGCACAGAACCAAGTCTGTCAAATGCCCTCAGTGCCCTGAGGCATTCGAGACAGTCTATCATCGTCAAAGGCACCTAGTAACCGCGCATAACATGGGACACAAATGCACATATTGCGAAAAGATTTTCGTCCGAAACTCTTTCATGAACGACCATATACGACGGTTTCATCTGAAGGAGAAGAACGTGGTCTGTTCAGTGTGTGGTGATAAATTCTTCAGCAAAGTGCATCTTAAGAATCACATGGTGAAACACATTGGGGTACGGAACCACCATTGTGAGGTTTGCGGGAAGGCCTTTCTCTGGAAGAAAAACTTGACGGGGCATATGGCGTCTCATAATAAACGGGCTGCCGTCTAG
- Protein Sequence
- MEVKLDVSEINCELCHESFNSFEEILQHLGFKHNLVYDFKVAAPLETYRLSDLKCLVCGLVARNFINLVTHTNLNHPKNSYPCEHCGQQFNKTRDLDNHKRNLHKEGGYTCDSCNESFSTNQRLRFHFLNTHLASCEICLKQFSTLEIKNKHMAAAHSDLRLGHKHEYIQEEIPDESDLLEANFQDLAQRKEKSRMNRANIAIILNMSTAMPFKYFKNQYLCFYCPKYFNECDDLKEHTVNSHVAYNTKDKCTKALKGTEFCIKLDISSLACKVCFEPFDDLDLLIDHLIFKHNAKYDRTITGITQPFKLARENMTCPVCKMENFNYFGTLLRHMNKNHSNNKFICDNCGEGFDNNLDRTDSDNTTVRRRDNLEGLFNNTTVIPFKWRGKYRCFYCAEDIVDYRDFRKHTKSHKINLGHHDPFKNIKSIKIDVSFVTCDICNESFTNVDDIIAHLVVKHKFECDKNLSHNVIPYNLKNLSCPNCSERFKLYKDLRTHVNRCRATSLYQCDQCPQKYHRKRDLAFHIKDIHEKDGYTCKFCTDSFITHSKLKLHVRDRHITVCHFCFEKHPTPESKRRHIVAMHKNKKCPRCAKVFVSKVGLANHLKKCIVKPEKAEAKPNSDAKQIRENIVSVLNMTTAMPFKFYMNRFRCFYCTKDFTDHEPLQEHTWSEHPTCDAEERSLRLVRGKDPVVKINIASLSCKICLESFPEFEAITDHLIKNHKTNYDQTVKSVFMSFKLVKDNMACPICAEVFRYFGKLLSHMNEVHTNNNIVCVYCGQTFRGQPNYRAHISYYHNEDNFKCFCGEKFENAMKLRSHKSKSHRTKSVKCPQCPEAFETVYHRQRHLVTAHNMGHKCTYCEKIFVRNSFMNDHIRRFHLKEKNVVCSVCGDKFFSKVHLKNHMVKHIGVRNHHCEVCGKAFLWKKNLTGHMASHNKRAAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -