Aalb023229.1
Basic Information
- Insect
- Argyresthia albistria
- Gene Symbol
- -
- Assembly
- GCA_963457715.1
- Location
- OY735282.1:455645-458405[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0005 0.029 15.3 0.2 2 23 29 51 28 51 0.94 2 18 0.32 19 6.5 0.0 2 23 77 101 76 101 0.91 3 18 0.083 4.8 8.4 0.1 3 23 125 145 123 145 0.93 4 18 0.029 1.7 9.8 0.4 1 23 149 172 149 172 0.94 5 18 0.34 20 6.4 1.5 1 21 178 198 178 199 0.94 6 18 0.32 18 6.5 0.5 1 22 206 227 206 229 0.83 7 18 0.31 18 6.6 1.2 1 23 236 259 236 259 0.92 8 18 0.00057 0.033 15.2 0.9 2 23 264 286 263 286 0.92 9 18 0.0005 0.029 15.3 0.2 2 23 319 341 318 341 0.94 10 18 0.17 10 7.4 0.0 2 23 367 391 366 391 0.91 11 18 0.14 8.4 7.6 0.1 3 23 415 435 413 435 0.90 12 18 0.055 3.2 8.9 0.3 1 23 439 462 439 462 0.95 13 18 0.11 6.3 8.0 0.6 1 21 468 488 468 489 0.95 14 18 0.069 4 8.6 0.5 1 23 496 519 496 519 0.90 15 18 0.031 1.8 9.7 0.8 1 23 526 549 526 549 0.92 16 18 0.002 0.12 13.4 0.8 2 23 554 575 553 575 0.95 17 18 3.1e-06 0.00018 22.3 2.6 1 23 581 603 581 603 0.98 18 18 1.9e-06 0.00011 22.9 4.6 1 23 609 631 609 631 0.96
Sequence Information
- Coding Sequence
- ATGGACTCGGCATGCTCAAACACCAAGATCATACTGAGACACTCGACGGTGTATCCGATCAGTGTGGTGAGAGGACGCAAGCTCACCTGTGGCTACTGTAACAGCACGTTTGTGAAACCGAGCGAGTTCCGACGACACGTCGCGGTCGAGCACAAGGCCGTAGACAGATACGCACTGCTTAAACGTAAAGATGGGACCCGATTAAGCCGAGTGGACATCACCGATCTTCAGTGCAGCGCACCGACCTGTGTGGAAGTGTTCGACTCACTCGCGGCACTCTCCACGCATCTCCTTCAGATACACAATCTGCCCATCGACCCCACCAAGGAACCACAACTGGTGCCGCTGCGACTGCAGAAAAACAATCTTGCCTGCGTCGTTTGCGAAAAGACTTTCTCTGGGATCTTCGAGTTATCGCAACACTCGGGCACGCACTTCCAAAAACATATGTGTGAGTCTTGCGGCAGGGGCTTCGAGACTGTAGCGGGGCTCGAGTATCACTCACTCACCAAGCATCAGGACGGGCACAAGTATCACTGTATGCGCTGCAAAACCAGCTTCCCCACCTTGAAAGAGAAGACGACACACGTACGCGAGAACAAGAAATGCCACACATTCGTCTGCAGTGAATGCAAGGAACGCTTCTTCTCGTTAAAACTGCGCGATCAACACCTGATCGATGCGCACGGACATGCGAAGAAGACGTATCCATGTTCTGAATGTAGCGAAGTGTTCCAAGAACGCAAGCCGTACTACAAACATTTTAAGTTGACGCACACGCAACATCTCAGATGTTCGTACTGCGAGAAAAAATTCACCAATCGAAGCGCCTATGAAGGGCACGTCTCCCAACAGCATACGGGGTCACGGAAGGACTCGGCATGCGCAAACACCAAGATCATACTGAGACACTCGACGGTGTATCCGATCAGTGTGGTGAGAGGACGCAAGCTCACCTGTGGCTACTGTAACAGCACGTTTGTGAAACCGAGCGAGTTCCGACGACACGTCGCGGTCGAGCACAAGGCCGTAGACAGATACGAAATGCTCAAACGTAAAGATGGGACTCGTTTGGTCCGAGTAGACATCACCGATCTTCAGTGCAGCGCACCGACCTGTGTGGAAGTTTTCGACTCACTCGATGCACTTTCCACGCATCTCCTTCAGATACACAAACTGCCTATTGACCCCACTAAGGAACCACAAATAGTACCATTACGACTGCAGAAAAACAATCTAGCTTGCGTCGTTTGCGAAAAGTCCTTTTCTGGCATTTTCGAGTTATCGCAACACTCGGGTAGTCACTTCCAAAAGCATATATGCGAATCTTGCGGCAGAGGCTTCGAGACTGTAGCCGGGCTAGACTATCACACGCTCACCAAGCATCAGGAGGGGCATAAGTATTACTGTGTGCGCTGCAAGACCAGTTTCCCCACATTGAAAGACAAAACGACGCACGTACGCGAGAATAAGTATTGCCAGACGTTCGTCTGCAGTGAATGCAAAGAGCGATTCTTCTCGTTAAAACTGCGCGAGCAACACTTGATCGATGCGCACGGACAAGAGAAGAAGACATATCCTTGTTCCGAGTGCGGTGAGGTGTTCCAAGAACGCAAGCCGTACTACAAACATTTCAAGTTAACGCATACACAGTACCTCAAATGTTCGTACTGCGGCGAAAACTTCTTCAAGCGAAGCGCTTACGAAATGCACGTGTCCCAGCATACAGGCCTGAGACCGTATAAATGCGATGTCTGTGATGCGACGTTTGTGCGCAAAGACTGCTTGAGGAAGCACATGGATAAGCATGACACGGTCAAGCACCACTTTTGTCCCGTCTGCAACAAATCCTTCATCAGGAACTATAGCCTGGTGCACCACATGAAAACGCACTACCCTGGATCTTAG
- Protein Sequence
- MDSACSNTKIILRHSTVYPISVVRGRKLTCGYCNSTFVKPSEFRRHVAVEHKAVDRYALLKRKDGTRLSRVDITDLQCSAPTCVEVFDSLAALSTHLLQIHNLPIDPTKEPQLVPLRLQKNNLACVVCEKTFSGIFELSQHSGTHFQKHMCESCGRGFETVAGLEYHSLTKHQDGHKYHCMRCKTSFPTLKEKTTHVRENKKCHTFVCSECKERFFSLKLRDQHLIDAHGHAKKTYPCSECSEVFQERKPYYKHFKLTHTQHLRCSYCEKKFTNRSAYEGHVSQQHTGSRKDSACANTKIILRHSTVYPISVVRGRKLTCGYCNSTFVKPSEFRRHVAVEHKAVDRYEMLKRKDGTRLVRVDITDLQCSAPTCVEVFDSLDALSTHLLQIHKLPIDPTKEPQIVPLRLQKNNLACVVCEKSFSGIFELSQHSGSHFQKHICESCGRGFETVAGLDYHTLTKHQEGHKYYCVRCKTSFPTLKDKTTHVRENKYCQTFVCSECKERFFSLKLREQHLIDAHGQEKKTYPCSECGEVFQERKPYYKHFKLTHTQYLKCSYCGENFFKRSAYEMHVSQHTGLRPYKCDVCDATFVRKDCLRKHMDKHDTVKHHFCPVCNKSFIRNYSLVHHMKTHYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -