Aalb023226.1
Basic Information
- Insect
- Argyresthia albistria
- Gene Symbol
- -
- Assembly
- GCA_963457715.1
- Location
- OY735282.1:446188-448969[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0031 0.18 12.8 0.1 2 23 55 79 54 79 0.94 2 18 0.00039 0.023 15.7 1.6 1 23 127 149 127 149 0.98 3 18 0.035 2 9.5 0.8 2 21 155 174 155 175 0.94 4 18 0.52 30 5.8 0.5 1 23 182 205 182 205 0.93 5 18 0.21 12 7.1 1.8 1 11 212 222 212 235 0.82 6 18 0.00064 0.037 15.0 1.6 3 23 241 261 239 261 0.92 7 18 0.56 32 5.8 0.4 1 23 267 289 267 289 0.98 8 18 0.00088 0.051 14.6 0.7 2 23 326 348 325 348 0.93 9 18 0.015 0.88 10.7 0.4 2 23 373 397 372 397 0.92 10 18 0.023 1.3 10.1 0.2 2 23 420 441 419 441 0.95 11 18 4.6e-05 0.0027 18.6 0.1 1 23 445 467 445 467 0.96 12 18 0.1 6 8.0 0.6 2 21 475 494 474 495 0.94 13 18 3 1.7e+02 3.5 0.3 1 23 502 525 502 525 0.81 14 18 0.013 0.74 10.9 0.7 1 23 532 555 532 555 0.95 15 18 1.1e-05 0.00065 20.5 0.5 1 23 560 582 560 582 0.97 16 18 0.00083 0.048 14.6 0.3 1 21 588 608 588 609 0.94 17 18 2.3e-06 0.00013 22.7 1.1 1 23 625 648 625 648 0.96 18 18 0.0015 0.085 13.9 1.6 2 23 655 677 654 677 0.96
Sequence Information
- Coding Sequence
- ATGTTGAGAAAGACACTGTGTTGTGAGTTCTGTGGCCAATCCTTCGACTTCGAACACTCCACCAGCTTTAGGAAACATATTGACGACAAGCACAGGTCGCAAGACAGATCCGACGCCATCAGAGATGAAACAATCTGCATGCGGGCAGATATCACTGACCTCAAATGCAATGATCCGAAATGCGTCAAAATATTCCCGTCACTCGACGATCTCGCTAAGCACTTGAAAGAGGAACACAACCTTCCCATTGACACGGAATCTTCTATTGCACTAGTGCCAGTGCGACTGCAATCGAGCAGATTAGCATGCGTCATCTGTAACAAGGTCTGTCTGACCATCCCGGGCTTGCTGCACCATTCGGGCACTCACTTCCTGCGGTACAAGTGCAACACATGCGGAAAAGGCTTCGAAAGACCCGACATGTGTGAAAAGCACGAATTAACGCACACGCTCCCACAGAACTACTGCAAGAGCTGCAATTACTCCTTCCCCACACCCGCGGCCAAGAAAAATCACCTCCGACACAGCAAACGCTGCCGGAACTTCTCTTGTCCCATTTGCAAGGACCGCTTCCTGAGCTGGAGCCAGCGCGAACAGCACCTATTCAGCGTTCACGGACGCCCGAAGACGACGTTCGTATGCCCCGAATGCGGACGAGTGTTCGAATGTCGCTCCCTGCATTACATACACTTTAGAAACGCGCATACACGTGATCTCGCCTGCACACACTGCAACAAAGAGTTCAAGAGCAAACGCCAGCTCGTAGAACATTCTGAGTGGCACACTTCCGACACGCCGTATAAATGCTACCTCTGTGAGATAGCTCTCGAATCGATGCAACATTTTGGTGAGCATATGCTCGTTCACCAGCAGAATGGGCGAGTGCCAGGAGAGGACAAGTCGCTAGCAAACGCCAAGATAATATTAAGGAACTCATCAGCGTACCCCGTGAAGTCGGCGGCCGGGGGCAAACTGCGCTGCTCGTTCTGTAGCCGCACGTGTGTAGACCCGGCAGAGTTGCGCAGACATATCGACCTCGACCACAAAACTGTAGATAGGGCCTCCGCCATCGGCAAGAATAAACGAATTTACCTCCGCATCGACATCACTGATCTACAGTGCAGGCATGCCGACTGCGTAAAAGCTTTCGACTCACTCCCTGACCTAACGAAACACCTAAAAGACGAGCACCGCCTTCCCATCGCCTCGGAAGTGAGTGCCGCTCTAGTGCCATTACGAATTCAGAGTGACAAACTGTCCTGCCTGATATGCGAGAAAAACTTCTCCGCATTCGGCGGTCTGTCTCGGCACACGGGCACTCACTTCCAGAGGCACATCTGCGAAGCGTGCGGCAGAGGCTTCGAGACCCCCGAGGGGCTTCGCAAGCACATGATCATGCACACGGTCGACGCTATCCAGCAGTACTGCCGCCGATGCAAGGCCACCTTCCCCACTAGCGACGCCAAGAAGAAACACCTCCGGGAAAGCAAGAAGTGTATGCAGTTTCGGTGCGTTGTTTGTAAGGAGCGCTTCTTGACTCAGGACAAGCGAGACGCGCACGGCAGAGCTGCTCACGGCCATGCCCGGCAAGTGTTTTCGTGCGCTGAATGTAGCGAACGGTTCACCGTTCGCAGCTCCTACTACCTTCACTTCCGCGCCGCTCACGGCCACGAGAAGTACAATTGCACCCAATGCGGCGGCACTTTCGCCACCAAGTATAACCTAAACATGCACATGGCACAGCACACAGGCGAGAGACCATTTAAATGCGACGTCTGCCTGAAGACATTTGTCAGCAAATACGCCATGAAGGCCCACGAGATGAAGTTAAAGAAATGCAAAGTCTCCAAGTACCTGGGCATGCCGAGGCCGTTCAATTGTGATGTCTGCGGAAAGTGTTACGTGAACAAAGACCAGCTGAGAGGGCACATGAGGGATGTACACGATGAGAGCAAGAAGAAACCGTGCACAGTATGCAAGAGAGTGTTCATTAGGAACAAGGAATTGAGGTTTCACATGAATAGATTCCATCCGGAGATTGAGCGAACCGATTAG
- Protein Sequence
- MLRKTLCCEFCGQSFDFEHSTSFRKHIDDKHRSQDRSDAIRDETICMRADITDLKCNDPKCVKIFPSLDDLAKHLKEEHNLPIDTESSIALVPVRLQSSRLACVICNKVCLTIPGLLHHSGTHFLRYKCNTCGKGFERPDMCEKHELTHTLPQNYCKSCNYSFPTPAAKKNHLRHSKRCRNFSCPICKDRFLSWSQREQHLFSVHGRPKTTFVCPECGRVFECRSLHYIHFRNAHTRDLACTHCNKEFKSKRQLVEHSEWHTSDTPYKCYLCEIALESMQHFGEHMLVHQQNGRVPGEDKSLANAKIILRNSSAYPVKSAAGGKLRCSFCSRTCVDPAELRRHIDLDHKTVDRASAIGKNKRIYLRIDITDLQCRHADCVKAFDSLPDLTKHLKDEHRLPIASEVSAALVPLRIQSDKLSCLICEKNFSAFGGLSRHTGTHFQRHICEACGRGFETPEGLRKHMIMHTVDAIQQYCRRCKATFPTSDAKKKHLRESKKCMQFRCVVCKERFLTQDKRDAHGRAAHGHARQVFSCAECSERFTVRSSYYLHFRAAHGHEKYNCTQCGGTFATKYNLNMHMAQHTGERPFKCDVCLKTFVSKYAMKAHEMKLKKCKVSKYLGMPRPFNCDVCGKCYVNKDQLRGHMRDVHDESKKKPCTVCKRVFIRNKELRFHMNRFHPEIERTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -