Aalb023242.1
Basic Information
- Insect
- Argyresthia albistria
- Gene Symbol
- -
- Assembly
- GCA_963457715.1
- Location
- OY735282.1:492650-495593[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0039 0.23 12.5 1.0 1 23 61 84 61 84 0.92 2 19 0.11 6.5 7.9 0.3 2 23 110 132 109 132 0.95 3 19 0.0016 0.092 13.8 0.7 1 23 154 176 154 176 0.98 4 19 0.00021 0.012 16.5 0.2 1 23 180 202 180 202 0.95 5 19 0.022 1.3 10.2 1.6 1 23 207 230 207 230 0.97 6 19 0.0003 0.017 16.0 1.3 1 23 236 259 236 259 0.98 7 19 0.00067 0.039 14.9 0.2 1 23 266 289 266 289 0.95 8 19 0.0016 0.091 13.8 4.4 1 23 295 317 295 317 0.98 9 19 1.6e-06 9.3e-05 23.2 2.4 1 23 323 345 323 345 0.98 10 19 1.4 79 4.5 0.6 1 13 351 363 351 365 0.89 11 19 0.0075 0.44 11.6 0.3 1 23 436 459 436 459 0.94 12 19 0.013 0.73 10.9 2.6 2 23 488 509 487 509 0.97 13 19 0.0033 0.19 12.8 0.1 1 23 557 579 557 579 0.95 14 19 0.14 8.3 7.6 0.6 3 23 586 607 585 607 0.93 15 19 0.001 0.059 14.4 5.6 1 23 613 636 613 636 0.97 16 19 5.3e-05 0.0031 18.4 1.1 1 23 643 666 643 666 0.98 17 19 2.7e-05 0.0016 19.3 1.2 1 23 672 694 672 694 0.96 18 19 2.5e-06 0.00015 22.6 2.4 1 23 700 722 700 722 0.98 19 19 2.6e-05 0.0015 19.4 4.5 1 23 728 750 728 751 0.95
Sequence Information
- Coding Sequence
- ATGGGGCAAATATCTGAAGgtGCCCTTGCTTTAGTCGGCGAGCTAGTCTCTTCCAAGAGTCCGCTCGTAGGACCAAGTGCGAGGAGCATCAACGCTTACAAGGATCTCATGAGCAAAATGAACGCTTCCGCCATTCTAGAAAACTCTACGGCCTGCCCCTTCAAGTGGTTCAAAAACGGATTCTTCTGTTTCTTCTGCGATGAAAAGTTCATTGATCCGAACCAGCTGAGGGACCACACCAGTCTCAATCATAAAAACGTCGAGATCTTTCCGTTCGTCCGCAAAATGAGAAAGAACGATTTGGTCAAAATCGACGTCACATTTTTAAACTGTAGAGTGTGCTCGCAATCCATTGAAGAACTTAATGACTTAAAAACCCACTTGAGAACTGACCACGAGAAAGAAATAGACGAAGCGTACATCGACGGTGTTATACCATTCAAGTTCGAGGGCGAAGGCTTCGAATGTCTGGTTTGCAAACAGAGATTCAACGTGTTTATAACACTGAACAACCACATGAACGTTCATCTGCAGAACTTCATTTGCGAGACTTGCGGGAAAGGTTTCGCGACGCCCAAAAGGTTGCAAGCACATTCCACTTCTCACGTCCAAGGAAACTTCACGTGCCAATCTTGCTACAAAGTTTTCGAAACTAAAGCCATGAGGATCAATCACGTTCAGAGGTTTCATAAACCCGTTTCAGTGTTCAAATGCCCCGATTGCTCTGAGACCTTCAAATCGTATCTGGACAGGAACAAGCATAGGAGGATCATTCACAACGTGACCTCTTTAGAATACAAGTGCCCGATATGTCCGAAAGTGTTTGCGCTGAGCGGGAAGCGAACCTCTCATGTGAAACAGGTGCACATGAGGGAGAAGAACCATCAGTGCACCATGTGCGAGTGGAGGTTCTTCTCGAAAAACGAGTTACACGACCACATGATCAAGCATATCGGCGAAAGAAAGTACCACTGCGATGAGTGTAAGAAAGCATTCGCGAGGAAGCAGACTCTTCGTGAGCACATGCGCATACACAGTGATGACCGGAGGTACATTTGCGTGGTGTGCGGGCGGGGGTTTGTGCAGAACTGTGAGGATCAAACCGCACGCCCTGACAGCACAGAGTGTTGCAATACAAACGATGACACCGCGCCGATCCAGGACGTAGGACCAACAATAGAACAACAGAAGCAGCAAGAGACAAAGAAACTCGCAGACATCGACGAGAGGAAGATCAGGAAGAAGAACGTGACGAATCTATTAGAATTTACAAGGATTTGCCCCTTCAAGTGGACGAAAAACCTTTACTTTTGCTTCTACTGCGAAAGCAACTTCTCCGATCCAGCTGCACTGAGACAACATAACGCAACAGATCATTCCACGgttaaacaaatacaaatcaaAAGAGCCCTGTCCAAGCTAAAAAAGCACGAGCTAGTCAAAACTGACATCACTAACACCAGTTGTAGCTTATGCAATGAGCCAATCAGTAATTTCAAATCCTTGAAGCACCATCTCAAAACGCACGGGAAAGCTATAGACTCAAACGTAAGCGACGGCGTTCTACCCTTCAGGTTAATCAAAGGCGACTTCCACTGCGTTCTTTGCGATGCTAATTACTTGGAATTTAAGACGCTCAATCAGCACATGAACCATCATTTCCAGAATTTCATATGCGAGCAATGCGGCGTGGGTTTTGTCACACCGGAGAGGTTGCGAACCCACGCGTTCTCCCACGAGACTGGGAGTGTGGCTTGCGACGCTTGCGACAAAGTCTTCCGCTCGACCAACGCAAAAAACGAACATCACGCAACAGTCCACATGCAAGTAAAGCGGCACCGATGCCCGCACTGCTCCGAATCGTTCCGGAACTACTTCCAAAGGAACAAACATATCATGACCGACCACGGCCTGAAAGTCAAAGAATTCAAATGTAATTTGTGCCCAAAAGTGTTCACGCTAAGCGGGAAGCTAGGCCACCATGTACGCACAGTCCATTTGAAGTTGAAGAGACACGCGTGTTCCGTTTGTGAATGGAAGTTCTACTCCAAGTCGGAGTTAAAGGAGCATATGATACGTCACGGCGGGGAGCGGAAGCACCGGTGTGAAGTGTGTAATAAGACGTATGCGCGGAAATACACGTTGAGGGAGCATATAAGGATACACGACGACGACAGGAGGTTCCCTTGTAGTGTCTGCGGGAAGGCTTTCGTGCAGAATTGTAGCTTAAAACACCACGTTAAGGTCCATCATCCGTTCTCGGTGAACGCGGTTTAG
- Protein Sequence
- MGQISEGALALVGELVSSKSPLVGPSARSINAYKDLMSKMNASAILENSTACPFKWFKNGFFCFFCDEKFIDPNQLRDHTSLNHKNVEIFPFVRKMRKNDLVKIDVTFLNCRVCSQSIEELNDLKTHLRTDHEKEIDEAYIDGVIPFKFEGEGFECLVCKQRFNVFITLNNHMNVHLQNFICETCGKGFATPKRLQAHSTSHVQGNFTCQSCYKVFETKAMRINHVQRFHKPVSVFKCPDCSETFKSYLDRNKHRRIIHNVTSLEYKCPICPKVFALSGKRTSHVKQVHMREKNHQCTMCEWRFFSKNELHDHMIKHIGERKYHCDECKKAFARKQTLREHMRIHSDDRRYICVVCGRGFVQNCEDQTARPDSTECCNTNDDTAPIQDVGPTIEQQKQQETKKLADIDERKIRKKNVTNLLEFTRICPFKWTKNLYFCFYCESNFSDPAALRQHNATDHSTVKQIQIKRALSKLKKHELVKTDITNTSCSLCNEPISNFKSLKHHLKTHGKAIDSNVSDGVLPFRLIKGDFHCVLCDANYLEFKTLNQHMNHHFQNFICEQCGVGFVTPERLRTHAFSHETGSVACDACDKVFRSTNAKNEHHATVHMQVKRHRCPHCSESFRNYFQRNKHIMTDHGLKVKEFKCNLCPKVFTLSGKLGHHVRTVHLKLKRHACSVCEWKFYSKSELKEHMIRHGGERKHRCEVCNKTYARKYTLREHIRIHDDDRRFPCSVCGKAFVQNCSLKHHVKVHHPFSVNAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -