Aalb016103.1
Basic Information
- Insect
- Argyresthia albistria
- Gene Symbol
- -
- Assembly
- GCA_963457715.1
- Location
- OY735269.1:9058340-9066304[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0059 0.34 12.0 1.3 1 23 146 169 146 169 0.96 2 19 9.8e-07 5.7e-05 23.9 2.3 1 23 178 200 178 200 0.97 3 19 5.6e-06 0.00033 21.5 2.1 1 23 207 230 207 230 0.95 4 19 0.00014 0.0084 17.0 1.5 2 23 256 277 255 277 0.97 5 19 1e-05 0.00059 20.7 2.5 3 23 286 306 284 306 0.97 6 19 8e-06 0.00047 21.0 0.7 1 23 312 335 312 335 0.98 7 19 0.013 0.75 10.9 2.0 1 23 405 428 405 428 0.93 8 19 2.1e-06 0.00012 22.9 1.3 1 23 437 459 437 459 0.98 9 19 0.0027 0.16 13.0 4.6 2 21 467 486 465 489 0.88 10 19 0.052 3 9.0 2.2 5 23 514 532 511 532 0.93 11 19 4e-05 0.0023 18.8 2.5 3 23 541 561 539 561 0.96 12 19 4.2e-05 0.0024 18.7 0.6 1 23 567 590 567 590 0.97 13 19 0.00021 0.012 16.5 0.6 1 23 600 622 600 622 0.98 14 19 2.1e-05 0.0012 19.7 2.1 1 23 628 650 628 650 0.96 15 19 0.0019 0.11 13.6 0.4 1 23 656 678 656 678 0.96 16 19 0.00018 0.011 16.7 4.5 1 23 684 706 684 706 0.99 17 19 7.8e-05 0.0045 17.9 5.6 1 23 712 734 712 734 0.98 18 19 5.2e-06 0.0003 21.6 0.8 1 23 740 762 740 762 0.99 19 19 0.00076 0.044 14.8 1.6 1 23 768 790 768 790 0.98
Sequence Information
- Coding Sequence
- ATGGAGAATGGGGATTCACCACTCACAGACTTGGATTCTTGCTGCCGAACTTGCATGGGCAGCTCCGTGGCAATGTTTGGTGTATATTCACGGTGTAATGAAGATATAATCGCTGATTTACTAAATACGCTTGCACACATAGAGATTGATACAAATGATGACCTACCAAAGTTGATATGTGCCACTTGCTACAATAAGCTAAAAGATTTTACAGTCTACATAAGTCAGGCTACAGCAGTAGAAGCCAAACTAAGGAGTCTAGCCAAGCTGCAAAAATTGCAAGAAATAGAGGAGAAGACAATTGAAATAAAAGTTGAAATCAACCAACATCAAATCAATGCTGGTGTCCAAATCAATGATTGTGGCAACATACCAGAGCCAACAAAATGTCATGCTGAAGATTCTTTATATGATCATAGGTCCAAAAAATATCAGTACACATGTGATTTATGCTTTATAACTTTCAGCAGACTTTTGTCATTGAAGGAgcacaaaacaaaaatacatccaCAAGTGAATTTGAAATGTGAGTTTACATGTAATGAATGCAACAAAAGTTTCAAGACCAACTCTGAATTGACACAGCACAAGCTCTTGCACTTACCAAAAACCCATCAATACCCGTGTCAGCATTGCCCTGAAAGTTTTAAACGAAAAACTTTACTCAACAAACATATTTTGTTAAAACATGAAGCAAATGAAGAAGCACAAAGCAGCTCAGATGAAGAAGCAAAACCAGAAATAAAGAGACAGCTAGATATATTAACCTGTAATGTTTGCCATGCAAAGTTTAAGTCCCAACAAGCACTGGCGGCTCATACGAGAAAGCATGTAAAACCTGGCCGGGTCCTAGCCTGTTCAGTATGCGGCAAGAAATTCAAGAGGGTTAGCCATGTGAAACGCCATGAGAGAACTCATGGGATCAACCTCCCTTTCAAGTGTACTATATGTCCCAAATCTTTTTACTCTGATGATATGTTGCTGTGGCATATGAATAAACAGCATGAAGTGTCGGCAACGGCCTTTCAAGACAAAGAATTAAGTCAATCGCGAGCCAGAGAGGaccaaataaatgaaataaaaattgaaCCTGAGCAAGATCAAGCCACTAATGATGATGTCCAAAATAATGATTCTGATGACCTGCCAGAGCTAGAtcatgatgctgatgatgataaacCTTtaatggtattaaagacaagaAAATCTCGGTTCACCTGTgatatatgttttgaaaatttcagcagACATGTATTTTTGAAGGAGCACAAAGCAAACATACATCCGGAAGCTAATTTGAAATGCGTTTTCACATGTGACGTTTGCAACAGAGCCTTCAAGAGCAACTCTAAGTTGTCACGGCACCAAATTATGCACAAATCGAAAAACTATCAATGCCAATGTCCACACTGTCCAAAAAGTTACAAACAGCAAAGTCTCCTTGACTACCATGTATTCTTCAAACACGGACCACACGGAGAAATGGAAGATGACGCTAAACCAGAAATAAAGCCAGAGATAGAAGTGATATCATGTATCCTTTGCCAAGAAACATTTCAGTCACAACATTCATTGGTTGCACATAAGAGAAAGCACATAAAACCGGGGAGAGTCCTAGCTTGTTCGATATGCAGTAAAGAGTTCAAGAAACTCAGCCACCTAAAGCGACATGAACTAACACATGAGGTCAACCGCCCTTTCAAATGTAGTGAGTGTCCAAAATCGTTTTATGCTGAAGACATGTTATTAAGGCATATGGATAAACAACATAAAGGTAAACCAGGACCATGCTCTCAATTCACTTGTGCTTATTGCTCCAAAGACTTTGGTTATATGTCGTCGTTACGAGAGCATATAAAGATACATATGGGACTGAGGGCATACTTATGTCCTACTTGTGGGAAGCGGTTTCATAGCGGTGGTAATTTGAAGCAGCATTTGCGGAGACACATAGGAGAGAAGCCATTTTTCTGTGATATGTGTCCGAAGAAGTTTATTAGTAaagGTGAAATGATGGGCCACCGCGTCACCCACACCGGCGAGAAGCCCTTCAAGTGCGACCAGTGTGGCTCAGCATTCACGAAGTCGCACTCGCTGTTGAAACACAAGCGGAAACACCTGGGAGTCAAGCCGCACGAGTGTGACGTGTGCTCTATGAGGTTCTTCAACAAGTCCCACCTGCAGCGTCACTACCGCATCCACACCGGCGAGAAGCCGTACCGCTGTGACTTGTGTGAACGCGCCTTTACACAGAGTGCGGACCTGCTCAAACACAAGCGCTCGCATCTGGGCGAGAAGATCtacaaATGCAACCAGTGCACCGACAGTTTTCGTCTTAAGAGTGAGCTCACCCAACATCTCACTGTACACTTCCTGTCTTCAAAATTACAATCTGCAGGACAGAATAGTCATGAGACTGGGACGGATGTTGTAGAAAATTGTTGA
- Protein Sequence
- MENGDSPLTDLDSCCRTCMGSSVAMFGVYSRCNEDIIADLLNTLAHIEIDTNDDLPKLICATCYNKLKDFTVYISQATAVEAKLRSLAKLQKLQEIEEKTIEIKVEINQHQINAGVQINDCGNIPEPTKCHAEDSLYDHRSKKYQYTCDLCFITFSRLLSLKEHKTKIHPQVNLKCEFTCNECNKSFKTNSELTQHKLLHLPKTHQYPCQHCPESFKRKTLLNKHILLKHEANEEAQSSSDEEAKPEIKRQLDILTCNVCHAKFKSQQALAAHTRKHVKPGRVLACSVCGKKFKRVSHVKRHERTHGINLPFKCTICPKSFYSDDMLLWHMNKQHEVSATAFQDKELSQSRAREDQINEIKIEPEQDQATNDDVQNNDSDDLPELDHDADDDKPLMVLKTRKSRFTCDICFENFSRHVFLKEHKANIHPEANLKCVFTCDVCNRAFKSNSKLSRHQIMHKSKNYQCQCPHCPKSYKQQSLLDYHVFFKHGPHGEMEDDAKPEIKPEIEVISCILCQETFQSQHSLVAHKRKHIKPGRVLACSICSKEFKKLSHLKRHELTHEVNRPFKCSECPKSFYAEDMLLRHMDKQHKGKPGPCSQFTCAYCSKDFGYMSSLREHIKIHMGLRAYLCPTCGKRFHSGGNLKQHLRRHIGEKPFFCDMCPKKFISKGEMMGHRVTHTGEKPFKCDQCGSAFTKSHSLLKHKRKHLGVKPHECDVCSMRFFNKSHLQRHYRIHTGEKPYRCDLCERAFTQSADLLKHKRSHLGEKIYKCNQCTDSFRLKSELTQHLTVHFLSSKLQSAGQNSHETGTDVVENC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -