Aleu019607.1
Basic Information
- Insect
- Argyra leucocephala
- Gene Symbol
- -
- Assembly
- GCA_963942445.1
- Location
- OZ012679.1:133865341-133868968[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.39 55 5.6 1.4 2 14 258 270 257 271 0.89 2 11 0.071 10 7.9 0.0 1 23 280 305 280 305 0.94 3 11 3.4 4.8e+02 2.6 2.2 1 23 312 335 312 335 0.94 4 11 0.022 3.1 9.6 0.7 1 19 341 359 341 363 0.95 5 11 0.035 4.9 8.9 0.0 1 23 472 497 472 497 0.92 6 11 0.14 20 7.0 3.9 1 23 504 527 504 527 0.98 7 11 0.017 2.5 9.9 3.2 1 23 533 555 533 555 0.98 8 11 0.013 1.8 10.3 0.6 1 23 561 584 561 584 0.92 9 11 2.6e-05 0.0037 18.7 0.3 2 23 590 611 590 611 0.97 10 11 3.5e-05 0.005 18.3 0.6 1 23 617 639 617 639 0.99 11 11 0.0003 0.042 15.4 3.7 1 23 645 668 645 668 0.96
Sequence Information
- Coding Sequence
- ATGTTGAAAATTAGATTGGATAAAACCAAATTATCTGTTAGCGATAATTTAGttcaaataaagattttaaataatggaaagaatattataaaagaatctAATCCAGATCCAAATGATTGTAAATTTGGTGAAGTATTCCTAGCTCATTATTTGGAAGAACATGCAATTGATTGGAGCGGTTTAATATATCCAGATGGAAATTTTGCTTGTTGTAGTAAAGTTGAACCAGATTACAGTTCATATAAAGAACATTTCGAAATCATTGATGATGTTATAATAGAAGAAAAAGCCGAACAAGCCAAAGGATCTATTGAACCTCAAGAAATTGTGGTTGAAGAAGAAGTTGGAGACGATCAACATTTTCAACATCAACAAGTTGCAACAGTTAAAGTAGGTGatgtaaataattcattttatatcgTACAACAAGGATATGAACCagaagaaattatatataaaaatagttttaacgatcaacattatattaaagttgaaaaatcTAATTTGGAATATAAGAGTGTGgaAGAATTGAGGCCAACTGAATCCTGTCATCCTTACGTGCAAGTGGTAGTTAAAGATGAAATTCCTGTTGTTGAAGAAGAAGTTTATACACAAAATGATTTTTCGCATGGGAGTGAGCAAATGTTTGAAATGGATGATAATGAAAATGACGAAGATGATTTTATAATAGAACTACCAAAAGATATTGATTTAGGTTGTTATCAAATgcctaaacattttttaaatacattaagtCAAATAGCGAataataaatgcaaattttgtaatagaaaatttacgAATTTGTATGACCATTATAAAGAGTATTTGGGAAAATATGTTTGTCATATTTCGCAGTGTGCCGAGCCTTTTGATAGTGTGGAAGATTTGAATGATCACATAGAAGAATTGCATTCAGATCCTGAATATGTATTTAAGTGTTACTTTTGTGAATTTAaagataatgaaaaacaaaatttagaattacattatagaaaaattcatttattagaaCGAAATTTTAAATGCTTAAAATGTGATGAAGATTTTTTCTCGCATGAAGAATTAATAGCTCATGATGATGTTCATGTAGCTTTTGGGGAAATTGATAATGACCAAAAATTTGATTCGAATTTCCATGATAATATGGATGTAAATGATAGTGCTGAAATCGAAGAGGACAACGAAGAtcaaatcactaaaaataaagatCTTGACACAGAATCTGATACTTCATCGGATGTGGAAGATAAAGATGCGAAGCAAAGAGATAATCATCATATTGAAGTTGACGATCCAATTCACCCTCATTTTATAAGTTTAATGAAACAATTTCATACAAGACGgtgtaaaatatgtaaagttAAATCTTCACTTTTATCAACtcattatagaaaaattcattttgaaaaattcacaTGCGATATTAATCAGTGTTCAGAACCATTTGATACAGAAGAAGAATTAGCTGCTCATACAGCTGAATTGCACATAGATCCAGATAATCCATTTAAATGCGCTTattgtgaatataaaacaaCAGAAAAGCGTCGATTGTCGTATCATTATAGGAGAAATCATTTGGTGGAAAAGAAATACCAATGTGATTATTGTCCAATGAAATTTTTCTATGAAAAGGAAAGAGTCCAACATCATAGAGTGCATACTGGAGAGCATCCATATTCATGTGATTTATGTGGTCAGGCATTTAAAACTGCGGTTATAATGCGAATGCATAAAAAACGTAAACATGAACCACCTTCAGAAAGTTGTGAAGTTTGTGgaaaactattttcaacaaaagatggAGTTCGAAGTCATATGAATGTACATCGAACCgataaattatttacatgtGATTTATGCGGTGTATCATTTTTAAGAAAGGATTCTTTAACAAGTCATTTAAATACCCATAGTGTAGTTAAACAATTTGCTTGTAATTTTTGTGAGAAACGTTTTGCTCATAAAGGAACCTTACGAGATCATTTTAAAACCCAACATAatccaaaatataattcattgGCGACGACGactaaaagaattaaaagaaatccaaattatgaatatgttgatgattaa
- Protein Sequence
- MLKIRLDKTKLSVSDNLVQIKILNNGKNIIKESNPDPNDCKFGEVFLAHYLEEHAIDWSGLIYPDGNFACCSKVEPDYSSYKEHFEIIDDVIIEEKAEQAKGSIEPQEIVVEEEVGDDQHFQHQQVATVKVGDVNNSFYIVQQGYEPEEIIYKNSFNDQHYIKVEKSNLEYKSVEELRPTESCHPYVQVVVKDEIPVVEEEVYTQNDFSHGSEQMFEMDDNENDEDDFIIELPKDIDLGCYQMPKHFLNTLSQIANNKCKFCNRKFTNLYDHYKEYLGKYVCHISQCAEPFDSVEDLNDHIEELHSDPEYVFKCYFCEFKDNEKQNLELHYRKIHLLERNFKCLKCDEDFFSHEELIAHDDVHVAFGEIDNDQKFDSNFHDNMDVNDSAEIEEDNEDQITKNKDLDTESDTSSDVEDKDAKQRDNHHIEVDDPIHPHFISLMKQFHTRRCKICKVKSSLLSTHYRKIHFEKFTCDINQCSEPFDTEEELAAHTAELHIDPDNPFKCAYCEYKTTEKRRLSYHYRRNHLVEKKYQCDYCPMKFFYEKERVQHHRVHTGEHPYSCDLCGQAFKTAVIMRMHKKRKHEPPSESCEVCGKLFSTKDGVRSHMNVHRTDKLFTCDLCGVSFLRKDSLTSHLNTHSVVKQFACNFCEKRFAHKGTLRDHFKTQHNPKYNSLATTTKRIKRNPNYEYVDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -