Aleu021969.1
Basic Information
- Insect
- Argyra leucocephala
- Gene Symbol
- -
- Assembly
- GCA_963942445.1
- Location
- OZ012680.1:30110312-30113432[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.023 3.2 9.5 1.8 2 23 638 659 638 660 0.95 2 10 2.6 3.7e+02 3.0 1.5 1 21 677 697 677 698 0.91 3 10 0.0055 0.78 11.4 0.2 2 21 719 738 718 739 0.93 4 10 2.6 3.6e+02 3.0 2.2 1 20 750 769 750 771 0.85 5 10 5.5e-05 0.0078 17.7 2.7 1 23 826 848 826 848 0.98 6 10 7.5e-05 0.011 17.3 0.5 1 21 856 876 856 877 0.96 7 10 0.0022 0.31 12.7 0.4 1 23 892 914 892 914 0.92 8 10 2.1e-05 0.003 19.0 1.3 1 23 920 942 920 942 0.98 9 10 9.4e-05 0.013 17.0 0.9 2 23 949 971 948 971 0.95 10 10 1.1 1.6e+02 4.2 0.1 1 15 977 991 977 994 0.83
Sequence Information
- Coding Sequence
- atGCCTTCTTTCTGTGTTGTTTTAGATTGTgaacaaaaatatgttcataCGGATGATGTTTCTTTTCATAaatTTCCAAAAGATGAAAAGCTGCTTAACCAATGGAAATTATTTACAGGTAGATGTGAGAGTTGGGAGCCTTCGAGATGGTCAGCTATATGTAGCAGGCATTTCaaagaaaatgattttagtaAATCTGCatcaagaaaaattttgaagcGAAATGCAGTTCCGTCAATTTTATTAAGTCAACATAGAAATTCTGGTGTGATAACATTAAATGAAGATCAACCCAAACCTatattagaagaaaatattaacaatattttcaacaattctgAAATTTCTCAAACCCAAAAGtttgaaaaagaagaaaaagaatcaaaaattataacgtTCCAACAACACTTAAATTCAAATAgtacaaatttgttttcaattcctACTTCAGGTAATAATGCTGTTAATTCAGtttctgaaatttttagtaTACCGCTAGACCTTCCTATGTGCATGGAGTCACCAAATTTGGAGACAATGCCTGTATCCTCTTGTAATATATCTGATCATgatatttcaaataatgaaGGACATAACTACGATATAAATATAAGTGGTACTTCaagtttcttaaatttttacgaATCTTCAACAGCACCATGTCGATTATGTGGCTTAGAAGACCATattacaaattcatttttaaatgattttgaaatatttggtaTGATTCAAAAGTGTATGCCGACATTAAATATAAGACAGGATGATATATTTTCTAAAGAAGTTTGCTCAAATTGTTTGGaacaattagaaaatttcaatgtatttgTAGACCAAGTTATATCACATCAAAgaaatttaatggaaaatataCCCTCTATTGAAATGCTTACATGTAAAGGAAAACATTCTACAGTTATTTCATCGgtgaaaataaaacaagaaccTGTTTCCAatatgaaaGTAAATATTAAACAAGAAATACAGGACACTCATTGTCCTCAATACACTGAAGAGAATGGGAGCTATCAAGGGGATAATAACGCTTCAGAGCAAATGAATTTACAAGATCAAGACGACAATTTTCCAATTGAAGCAGAAATTGAagatcaaaaatttcattttagggATTCAAATTCACTAACCACAcgtgaaattgtaaaaaattgtgatattattgaaattataaatttggaGGATGGTTATATTGATATACCTGATGATGAAATAGAagattcacaaaacaaaattgaacaacgaatttcaaatgaaaaccACCCAAAAGTTATAGAtaataaagaaatcaaaattcaaaagaaaattattgatgagaAAAATACAGAATCATTTCTAGAGCTTAATTCAATCCAATCATCCCTACTTCAGAGTGTTATCGAAGAGCATAATTATACgagaaattttgaaacaaaaattgatcaaaaaataaGAGATTATAAACAAGAAGAACCAGAAGTATATGAAAACGATCAAAGTTTTTGTGAAGatgaatcaaatattaaaaatcatgaTTTCTTTGGTTTGAATTgtgttatacaaaaaattgaaactacCAACTCTCCCAAGAAAATTGTtccaaagaaagaaaaaaatatggaaaagaaCCAAATTATAAAAGGAATTGAAACTCAagctaatattgaaaaaaatgcaattgaatcaatttcatcagaaaaatttgaccaagaaaacataaaaatatctgaaaatattgaaaatcagcAGAAAAAACTGGATGTTGTTTTAGATATTACAGACCGATTAATTTTTTCTGATGCGAATTTATCAAATTCTAGTTTTATACGTTcaaaaacatcaaataaatCTAATATAGTTGTTATTAATGAAAGTATTCTTAAACCCGGTGACCAACAATCTTTTGAATTACGAAAATGCTTAGAATGTGgactacaatttttttcaatagatagttttaatgatcatcaaaaattACATCATGATAAATTACcttttgatgaaattaaaacatCTGAAGCTATATGCAcacatttttgtgttttatgtgAATCAAACTTTGATTCATTTTATGATTTACTTAAACATCGGAGTAAATGTcgtgtaaaaaatattctttcaactaagaaatcaaataaaatttcaaagaatgTTTGGAATTGTCCGATgtgcttaaaaatttttacctcAAAATTAGCATTAAATAATCatcgaaaatatatttgtaaattccCACAAAATGGAAATcgttttaattgtaaatattgtggaaactattttgaaaaatggaTTCTTTGTCGACGTCATGAAAAATTATGTCGTTTAAGTAAAATGAGAAGAACAATTGAAAAGGTAGAAAATGTAGAGGAACAAGATAAATCAgatgatataaaatcaaatgaaaaagatgaagaaattgataaaaaaattattttcgattcAGAGTCAATTAATCTTGAAAATCCTATAGATGAACGTTATAATTGTGAAACTTGTAATCGTAGCTATACacgttttcaaaatttaattcgacATAAGAAAGTGCATAGACCAAAAAATGAATGGAATTATAAATGTGGTAGTTGTGGCAAACGTTTTGATCGAatgtatgatttaaaaattcatttaaaatcagCTGAATGTCCATGTGTACCATCAAAACctgatacaatattttttatttgtcaaatatgtggtaaaaaatttaaaaccttaCAAATTCTTAAAGAACATGGAGTAACACATTCAGATCAATTACCATATATTTgtcaaatatgtaataaaagttttaaggCATTGAGAAATTTAAGACAACATAAAATCACACATACTAATGCTAAAACCGTACAATGtgatttatgtaataaaacatttaaaagattGAATGGTCTAATACAGCATAAAAGaggatttcattttaaaattaaaccacATGTTTGTGAAATTTGTAAACATTCTTATTCATTGAAAGGTGATATGCTTAGATGTAAACATAAATACTTAAGTTTATag
- Protein Sequence
- MPSFCVVLDCEQKYVHTDDVSFHKFPKDEKLLNQWKLFTGRCESWEPSRWSAICSRHFKENDFSKSASRKILKRNAVPSILLSQHRNSGVITLNEDQPKPILEENINNIFNNSEISQTQKFEKEEKESKIITFQQHLNSNSTNLFSIPTSGNNAVNSVSEIFSIPLDLPMCMESPNLETMPVSSCNISDHDISNNEGHNYDINISGTSSFLNFYESSTAPCRLCGLEDHITNSFLNDFEIFGMIQKCMPTLNIRQDDIFSKEVCSNCLEQLENFNVFVDQVISHQRNLMENIPSIEMLTCKGKHSTVISSVKIKQEPVSNMKVNIKQEIQDTHCPQYTEENGSYQGDNNASEQMNLQDQDDNFPIEAEIEDQKFHFRDSNSLTTREIVKNCDIIEIINLEDGYIDIPDDEIEDSQNKIEQRISNENHPKVIDNKEIKIQKKIIDEKNTESFLELNSIQSSLLQSVIEEHNYTRNFETKIDQKIRDYKQEEPEVYENDQSFCEDESNIKNHDFFGLNCVIQKIETTNSPKKIVPKKEKNMEKNQIIKGIETQANIEKNAIESISSEKFDQENIKISENIENQQKKLDVVLDITDRLIFSDANLSNSSFIRSKTSNKSNIVVINESILKPGDQQSFELRKCLECGLQFFSIDSFNDHQKLHHDKLPFDEIKTSEAICTHFCVLCESNFDSFYDLLKHRSKCRVKNILSTKKSNKISKNVWNCPMCLKIFTSKLALNNHRKYICKFPQNGNRFNCKYCGNYFEKWILCRRHEKLCRLSKMRRTIEKVENVEEQDKSDDIKSNEKDEEIDKKIIFDSESINLENPIDERYNCETCNRSYTRFQNLIRHKKVHRPKNEWNYKCGSCGKRFDRMYDLKIHLKSAECPCVPSKPDTIFFICQICGKKFKTLQILKEHGVTHSDQLPYICQICNKSFKALRNLRQHKITHTNAKTVQCDLCNKTFKRLNGLIQHKRGFHFKIKPHVCEICKHSYSLKGDMLRCKHKYLSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00160741;
- 90% Identity
- iTF_00160741;
- 80% Identity
- iTF_00160741;