Aleu027670.2
Basic Information
- Insect
- Argyra leucocephala
- Gene Symbol
- -
- Assembly
- GCA_963942445.1
- Location
- OZ012681.1:22461580-22463294[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.4 56 5.6 8.5 1 23 23 45 23 45 0.97 2 12 0.96 1.4e+02 4.4 1.0 2 12 212 222 211 225 0.84 3 12 0.00032 0.045 15.3 0.6 1 23 254 276 254 276 0.96 4 12 0.086 12 7.7 0.5 2 23 281 300 280 300 0.91 5 12 5.4e-05 0.0077 17.7 3.0 2 23 323 344 322 344 0.97 6 12 1.9e-06 0.00028 22.3 0.4 2 23 350 371 349 371 0.97 7 12 0.0003 0.043 15.4 0.9 1 23 377 400 377 400 0.92 8 12 0.045 6.3 8.6 2.2 1 23 406 431 406 431 0.94 9 12 0.00024 0.034 15.7 0.8 1 23 437 460 437 460 0.98 10 12 0.031 4.4 9.1 6.3 1 23 468 490 468 490 0.98 11 12 0.001 0.15 13.7 2.0 2 23 497 518 496 518 0.96 12 12 2.2e-05 0.0031 19.0 0.5 1 23 524 546 524 546 0.97
Sequence Information
- Coding Sequence
- atgcatAAGATATTGCAAGAATATAAATGtggagaaatatttttatccaaaGCTTCTGTATATATTTTCGTTTGTTGTcattgtaaagaaaaatttgacaattttacatcttttcgaaatcataataaaaatcacAACTGTTATGAAAACTATTCAAGTGATGAGGATATTTATActatgcaaattaaaaaagtagaTTTCTTAGACGAAGAAGAAATGGCAAATaaagtgtttgaaaaaatttatattgaaaaatatgattCTGATTTGCAAAAAGTTTCAAATAATTCGAACGAAAGTTACATATTAAATGATATTgatcatatttttgaaaagaaaaaagatgTAGAGTTTGACAAGGAAAGCTCGCTAAAGcaatcaaaaacaaacaaatttaattcaaattttttaaaggaaGTTAACGACATTCCATATGCAACAAATAGTAATACAAATTCAAACTCAAATGACATTGAATTACAATCGGAAAGTCTTAATGAAGACTCATTAGAAAGTTTTAATACTGACAGCATCAATTTTCCAAGCTTTGCTAAATCAAAGTTTGAAAATGAAACTTTTTATTCGGACAATGAAACTGAATTCAAAAACAGCAGTCATCGAAAAAAGAAAGTTTATTGCCCTTATTGtaaatatgaattcaaatattttgaaaatcatgACCAGCAAAAATGTGCTGTTAttcaaaacattattaaaaaacataatggTAATTATAACACACTTGAAAATGaaggtatttatttatgtaaagaATGTCCAAGATATTTTGAAAACCTAGAGAAGTTAGCTTTACATCGAAGGTCTCATTGTAATAGTGGAACTTGCTTAATCTGTGATAAAGAGTTCATTAGTCTAGAACGTCATATTAAATCGAAGCATTCTGgaaaaagatttgaaaaatcCAAAACAgtgttaaatatgaaaattggtCCCAATCCGACACTACAATGTAGTTATtgcgataaaaattttaaaattaaaattcatttgcaaaaacATGAGCAGATGCATCAAAATGATTCTTTAAAATGTGATTAttgtggaaaatattttaaagcgccaatattactaaaaaatcaTATTCGAACTCACACGGGTGAAAAGCCTTTTCAGTGCACAGAATGTCCGACAGCTTTTGCTCTCAAAAGGAATTTAAATACTCATTTCATATATAAGCACACCGATGATAAACCCTTTGAATGTAGACATGAGGGCGGATGtggtaaatatttcaaaacagaACAATTACGGAATAATCATGAAAAACGACACAATCAAAATGTGGAATTTCAGTGTGAAGTATGTGGGATGGAATTCAATATACAGGCTAAACTGAGAATGCATTACAAGAAAAAACATATGGATTATAGCGAACGTCCACATCAATgtcatttttgtattaaaaaatttgtagaaaaagGTCATTTACTTGAACATGAACGTACTCACACTGGCGAAAAGCCTTTGAAATGTAATCAATGCTCAAGTAGTTTTGCAAAAAGAAGTTCActtcaagagcataaaaaattgCATTCGGGTGAAAAGAATCACGTTTGTAAAATATGTGGAAAAGCTTTTGCTCAATTGGCTGGGTATTCCAATCatgtaaaaaaacattattga
- Protein Sequence
- MHKILQEYKCGEIFLSKASVYIFVCCHCKEKFDNFTSFRNHNKNHNCYENYSSDEDIYTMQIKKVDFLDEEEMANKVFEKIYIEKYDSDLQKVSNNSNESYILNDIDHIFEKKKDVEFDKESSLKQSKTNKFNSNFLKEVNDIPYATNSNTNSNSNDIELQSESLNEDSLESFNTDSINFPSFAKSKFENETFYSDNETEFKNSSHRKKKVYCPYCKYEFKYFENHDQQKCAVIQNIIKKHNGNYNTLENEGIYLCKECPRYFENLEKLALHRRSHCNSGTCLICDKEFISLERHIKSKHSGKRFEKSKTVLNMKIGPNPTLQCSYCDKNFKIKIHLQKHEQMHQNDSLKCDYCGKYFKAPILLKNHIRTHTGEKPFQCTECPTAFALKRNLNTHFIYKHTDDKPFECRHEGGCGKYFKTEQLRNNHEKRHNQNVEFQCEVCGMEFNIQAKLRMHYKKKHMDYSERPHQCHFCIKKFVEKGHLLEHERTHTGEKPLKCNQCSSSFAKRSSLQEHKKLHSGEKNHVCKICGKAFAQLAGYSNHVKKHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -