Aleu008217.1
Basic Information
- Insect
- Argyra leucocephala
- Gene Symbol
- zfh1
- Assembly
- GCA_963942445.1
- Location
- OZ012678.1:18485282-18490271[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0026 0.37 12.5 3.3 1 23 173 199 173 199 0.95 2 10 2.8e-06 0.0004 21.8 1.2 1 23 205 227 205 227 0.96 3 10 4.7e-05 0.0067 17.9 0.3 2 23 233 254 232 254 0.97 4 10 1.3e-05 0.0019 19.6 1.0 1 23 260 282 260 282 0.98 5 10 0.037 5.3 8.8 0.1 8 23 291 306 290 306 0.95 6 10 2e-05 0.0028 19.1 1.6 1 23 312 334 312 334 0.95 7 10 0.00022 0.032 15.8 0.1 2 23 340 361 339 361 0.98 8 10 5.5e-05 0.0078 17.7 1.2 1 23 367 389 367 389 0.98 9 10 0.0093 1.3 10.7 4.0 2 23 395 417 394 417 0.95 10 10 8.2 1.2e+03 1.4 2.0 1 14 422 435 422 436 0.87
Sequence Information
- Coding Sequence
- ATGGATGAACTAATTGAAATATGTCGCACATGCTTAAGTCAAGACGAGAAGTTATTACCAATTAATTCAACTATCGAATCGGATTGCCAAATAgcagattattttaaaaagtatttaaaaattagtttggTATATGATGATAATTTGCCCTCAAATATTTGTCTTAAATGCTTAAATAAATTGTTGGAAGTGCGAAAATTTTACTTACTGTGTCAGGattcagaaaattatttaaaactcaaATTGCAAATTCCTTCGGAAGAAATTAAGTCGAATATCATAATCAGTCAGAATCAAAacgaatttcaaaatttggaaGAAAATATTGGGGAGACGTTTAATTTAGTAAAGGAAGAACTAAAAATTCagtattttaaaactgaaaatccTTTTGAGGAAGATTTTCAAAATTGTAATTCAACTACATCGGAAAATTTTTCACATTACGAAGTACTTGAAGAATATGTAGCGAATCCAATAATTTCTACAGTAACATCAAACATTCAAAAAGAGAATCATGAATGTCGCATATGCAATGAAAGTTTTAataaaacttttaaagctaaatataatttgaaaattcacaTGAATCAGCACACTGGGGCGAAACCATTCAAAtgtaatatttgcaataaaaatttcgTTTCTCCATCAAGCTTAAGACTGCATAAAACTTTACATGAtggtaaaaaaattcaatgtccAGTATGTGATACAAAATTAGCAGCAAAAACTCAATTAAAGACTCATATGAGAATGCACACAAATGAACGACCATATATATGTTCTCAATGTCCAAAAAGTTATAAACAATTATGTGCACTAAAAGTTCATATAGCCACTCATTCTGCTGTTAAATCAGTGCAGTACAAAGCTTTTAAAGTGAAATATGATCTCCAAATTCATATGAATCAGCATACTGGTGAAAAACCATTTAATTGTAattcttgtaataaaaaattttcctctCCGTCAAGTTTGAGACTTCATAAAATCTTACATGATGGTAAAAAAGTTCAATGTCCAGTTTGTGATACAAAATTAGCGGCAAGagcacaattaaaattacatatgagaATTCATACTAATGAGCGaccGTATGTGTGTACTCAATGTCCGAAAAGCTATAAACAAATGTGCGCGTTGAAAGATCACATAGCTTCGCATTCTGTTAAATCAGTACAATGTGATGAATGCTCAGCctgttttcattcaaaaaacaatttattatcgCATAAAATCAAAACACATAGACCTAAAAGATTTCATTGTAATACATGTTCAAAACTATGTTCAACACCATATCTGTGA
- Protein Sequence
- MDELIEICRTCLSQDEKLLPINSTIESDCQIADYFKKYLKISLVYDDNLPSNICLKCLNKLLEVRKFYLLCQDSENYLKLKLQIPSEEIKSNIIISQNQNEFQNLEENIGETFNLVKEELKIQYFKTENPFEEDFQNCNSTTSENFSHYEVLEEYVANPIISTVTSNIQKENHECRICNESFNKTFKAKYNLKIHMNQHTGAKPFKCNICNKNFVSPSSLRLHKTLHDGKKIQCPVCDTKLAAKTQLKTHMRMHTNERPYICSQCPKSYKQLCALKVHIATHSAVKSVQYKAFKVKYDLQIHMNQHTGEKPFNCNSCNKKFSSPSSLRLHKILHDGKKVQCPVCDTKLAARAQLKLHMRIHTNERPYVCTQCPKSYKQMCALKDHIASHSVKSVQCDECSACFHSKNNLLSHKIKTHRPKRFHCNTCSKLCSTPYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -